Browse Element(s) Details


OsAffx.17613.1.S1_at

Description tigr:9637.m00697
TID=OsAffx.17613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0945011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09420Os.45976.1.S1_x_at4/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420Os.45976.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09420OsAffx.17299.1.S1_at1/119+5056137..5064493transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09430OsAffx.31869.5.S1_x_at2/119+5073754..5075376retrotransposon protein, putative, unclassified
LOC_Os09g09439NANA9+5084024..5084781NA
LOC_Os09g09450OsAffx.17613.1.S1_at11/119+5086530..5086994pentatricopeptide, putative, expressed
LOC_Os09g09460Os.53056.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460OsAffx.29777.1.S1_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09460Os.53056.1.S1_x_at11/119+5088760..5090228Harpin-induced protein 1 containing protein
LOC_Os09g09470Os.24667.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09470Os.53643.1.S1_at11/119+5093691..5101635transducin family protein, putative, expressed
LOC_Os09g09480Os.9666.1.S1_at11/119+5102036..5105834SNF7 family protein, expressed
LOC_Os09g09490OsAffx.17614.1.S1_at11/119+5109134..5111958NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17613.1.S1_at--460--8491Chr09:5086932..5086956 (25 bp)
TGGACAAGGCTCTTGCGGAAAAGAT
LOC_Os09g09450
OsAffx.17613.1.S1_at--437--4691Chr09:5086918..5086942 (25 bp)
GCGGAAAAGATGGTCATGGTCTCAT
LOC_Os09g09450
OsAffx.17613.1.S1_at--713--811Chr09:5086903..5086927 (25 bp)
ATGGTCTCATGGAGAAGATGTGCCT
LOC_Os09g09450
OsAffx.17613.1.S1_at--890--6491Chr09:5086835..5086859 (25 bp)
GATAGGATGCATGAGGCTGAGAACC
LOC_Os09g09450
OsAffx.17613.1.S1_at--327--8331Chr09:5086821..5086845 (25 bp)
GGCTGAGAACCTATTGCATATCATG
LOC_Os09g09450
OsAffx.17613.1.S1_at--1060--2971Chr09:5086772..5086796 (25 bp)
AATGTAAGGTGCACTACGTTGATCA
LOC_Os09g09450
OsAffx.17613.1.S1_at--514--5951Chr09:5086681..5086705 (25 bp)
GAGCAAAATCAAGTCTGGTAACCTA
LOC_Os09g09450
OsAffx.17613.1.S1_at--741--3311Chr09:5086621..5086645 (25 bp)
CACATGCGAGGCTGAAAGGTTCAGA
LOC_Os09g09450
OsAffx.17613.1.S1_at--40--8071Chr09:5086588..5086612 (25 bp)
GGAGAAGATCTTATGCAGCGGTAGT
LOC_Os09g09450
OsAffx.17613.1.S1_at--691--10131Chr09:5086577..5086601 (25 bp)
TATGCAGCGGTAGTTCATTGGCAGT
LOC_Os09g09450
OsAffx.17613.1.S1_at--550--10551Chr09:5086564..5086588 (25 bp)
TTCATTGGCAGTGTGTCAGTGGGAA
LOC_Os09g09450
Target Sequence 
TGGACAAGGCTCTTGCGGAAAAGATGGTCATGGTCTCATGGAGAAGATGTGCCTCGAGCTGGATGTGTATACGGTATACA
TACAATATGGTAGGGCAGATAGGATGCATGAGGCTGAGAACCTATTGCATATCATGATTGAGAATGGTGTCAGACCAAAC
AATGTAAGGTGCACTACGTTGATCAGCATCCGTTGCAATGAAGGTGGCATGGTCGAGGCAAGAAGGCTGTTTCAAGAGAT
GGCAGGAAATGGAGCAAAATCAAGTCTGGTAACCTACAATGTTATGATTGATGGTACATCAAGAAGGGGAGCACATGCGA
GGCTGAAAGGTTCAGAAAGGAGATGGAGAAGATCTTATGCAGCGGTAGTTCATTGGCAGTGTGTCAGTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis