Browse Element(s) Details


OsAffx.17884.1.S1_s_at

Description tigr:9637.m02147
TID=OsAffx.17884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2495411/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0010050biological_processvegetative phase change
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17884.1.S1_s_at--427--7631Chr09:14898921..14898945 (25 bp)
GGGACTACAGATAATGAACCAGCAA
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--621--671Chr09:14898934..14898958 (25 bp)
ATGAACCAGCAAGGTTGAGACTGCA
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--362--9831Chr09:14898959..14898983 (25 bp)
TAAAATCTGCTCTGCAACTCACTGG
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--538--3831Chr09:14898965..14898989 (25 bp)
CTGCTCTGCAACTCACTGGAAGGAA
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--122--8211Chr09:14898982..14899006 (25 bp)
GGAAGGAACCATCATATGACTTTGA
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--1105--10251Chr09:14899002..14899026 (25 bp)
TTTGAAGAACAAGGGCCTTCCCATC
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--133--5191Chr09:14899942..14899966 (25 bp)
GCAAGGTGACTATCCATGTGGATAC
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--303--2071Chr09:14899965..14899989 (25 bp)
ACATTCACAACCACCATTGTGGAGT
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--383--31Chr09:14899980..14900004 (25 bp)
ATTGTGGAGTGCATCAGTGAACCTA
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--371--5551Chr09:14900015..14900039 (25 bp)
GAAAGCTGCCCAGGAACATGCTGCT
LOC_Os09g24954
OsAffx.17884.1.S1_s_at--792--4771Chr09:14900019..14900043 (25 bp)
GCTGCCCAGGAACATGCTGCTCAAG
LOC_Os09g24954
Target Sequence 
GGGACTACAGATAATGAACCAGCAAGGTTGAGACTGCATAAAATCTGCTCTGCAACTCACTGGAAGGAACCATCATATGA
CTTTGAAGAACAAGGGCCTTCCCATCTTAAACTGTTCACTTGCAAGGTGACTATCCATGTGGATACATTCACAACCACCA
TTGTGGAGTGCATCAGTGAACCTAATCGTTCCAAGAAAGCTGCCCAGGAACATGCTGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17884.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis