Browse Element(s) Details


OsAffx.17891.1.S1_at

Description tigr:9637.m02207
TID=OsAffx.17891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25500Os.17086.1.S1_at11/119+15285308..15291579expressed protein
LOC_Os09g25510OsAffx.30941.1.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.9.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.5.S1_x_at8/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.2.S1_x_at5/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17891.1.S1_at--273--4071Chr09:15314689..15314713 (25 bp)
CGAGGAAGGTGGACATGCCAGCAAC
LOC_Os09g25530
OsAffx.17891.1.S1_at--1077--5311Chr09:15314693..15314717 (25 bp)
GAAGGTGGACATGCCAGCAACAGAG
LOC_Os09g25530
OsAffx.17891.1.S1_at--561--8531Chr09:15314698..15314722 (25 bp)
TGGACATGCCAGCAACAGAGGAGCT
LOC_Os09g25530
OsAffx.17891.1.S1_at--279--5671Chr09:15314700..15314724 (25 bp)
GACATGCCAGCAACAGAGGAGCTCG
LOC_Os09g25530
OsAffx.17891.1.S1_at--137--4371Chr09:15314731..15314755 (25 bp)
CCACGGCGACATGGGAGCTTGATGA
LOC_Os09g25530
OsAffx.17891.1.S1_at--1064--4211Chr09:15314817..15314841 (25 bp)
CCGCTGTGCTCGTTGGCCGGCAACA
LOC_Os09g25530
OsAffx.17891.1.S1_at--218--6071Chr09:15314828..15314852 (25 bp)
GTTGGCCGGCAACACCTTCACGGAG
LOC_Os09g25530
OsAffx.17891.1.S1_at--892--2131Chr09:15314839..15314863 (25 bp)
ACACCTTCACGGAGCCACCAGTGGA
LOC_Os09g25530
OsAffx.17891.1.S1_at--430--10511Chr09:15314844..15314868 (25 bp)
TTCACGGAGCCACCAGTGGACTTAT
LOC_Os09g25530
OsAffx.17891.1.S1_at--213--5871Chr09:15314850..15314874 (25 bp)
GAGCCACCAGTGGACTTATTATTTC
LOC_Os09g25530
OsAffx.17891.1.S1_at--887--4391Chr09:15314852..15314876 (25 bp)
GCCACCAGTGGACTTATTATTTCGT
LOC_Os09g25530
Target Sequence 
CGAGGAAGGTGGACATGCCAGCAACAGAGGAGCTCGAGGAGGCCACGGCGACATGGGAGCTTGATGAGGCCGGCGAGAAG
GGTGCTCGCCACGCTGTCCCCATTTGGCCCTCACCTCCCCAATCTCCCCCGCTGTGCTCGTTGGCCGGCAACACCTTCAC
GGAGCCACCAGTGGACTTATTATTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis