Browse Element(s) Details


OsAffx.17950.1.S1_at

Description tigr:9637.m02524
TID=OsAffx.17950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2868011/11retrotransposon protein, putative, unclassified
LOC_Os06g413408/11retrotransposon protein, putative, unclassified
LOC_Os09g286708/11hypothetical protein
LOC_Os09g158408/11retrotransposon protein, putative, unclassified, expressed
LOC_Os01g038307/11retrotransposon protein, putative, unclassified
LOC_Os08g307102/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28620Os.52987.1.S1_at11/119+17413086..17414590esterase, putative, expressed
LOC_Os09g28630Os.52444.1.S1_at11/119+17416340..174174552-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28640NANA9+17420209..17421449esterase, putative, expressed
LOC_Os09g28650Os.55582.1.S1_at9/119+17423563..17424621esterase, putative, expressed
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17950.1.S1_at--623--1371Chr09:17444711..17444735 (25 bp)
AGAGCGCATCGCGTTTGATGGTGCT
LOC_Os09g28680
OsAffx.17950.1.S1_at--258--10271Chr09:17444698..17444722 (25 bp)
TTTGATGGTGCTTGTGGTCGTCGCA
LOC_Os09g28680
OsAffx.17950.1.S1_at--195--7211Chr09:17444682..17444706 (25 bp)
GTCGTCGCACTTGCAAGTCTGGGAA
LOC_Os09g28680
OsAffx.17950.1.S1_at--420--4316Chr09:17443967..17443991 (25 bp)
CCTTCCTCGTGGCTCAAGATGATGG
LOC_Os09g28680
OsAffx.17950.1.S1_at--632--45111Chr01:1613439..1613463 (25 bp)
GCCGAGCAGGCCCAAGACAAGACGA
LOC_Os01g03830
OsAffx.17950.1.S1_at--565--27510Chr01:1613457..1613481 (25 bp)
AAGACGACGGCCCACGGCATTGGCA
LOC_Os01g03830
OsAffx.17950.1.S1_at--1066--3597Chr01:1613474..1613498 (25 bp)
CATTGGCACCATGCGCGGGCAAGCG
LOC_Os01g03830
OsAffx.17950.1.S1_at--1019--1837Chr01:1613575..1613599 (25 bp)
ACGCTGTTTCAAGTGGCTCGGAGGC
LOC_Os01g03830
OsAffx.17950.1.S1_at--679--6057Chr01:1613602..1613626 (25 bp)
GAGTTGTACTGGGACCCACGCGCGA
LOC_Os01g03830
OsAffx.17950.1.S1_at--784--5818Chr05:8115260..8115282 (23 bp)
GACCCACGCGCGATTTCGCGAGCAT
NONE
OsAffx.17950.1.S1_at--236--7997Chr01:1613666..1613690 (25 bp)
GGAGGCTTTGGACTGGATGCGCGCA
LOC_Os01g03830
Target Sequence 
AGAGCGCATCGCGTTTGATGGTGCTTGTGGTCGTCGCACTTGCAAGTCTGGGAAGCTTGGCTGGTTCCTGGAGGGCAAGG
TGATCGGGGTCGATCTTGGTCAACGGCGGATCGGGACTAGACTCAGGGAGGAGTTGAGGTCCAAAGCGATCAAGGATGCC
GGGGAGGCCAAGCCAATCCAGCCCTTCCTCGTGGCTCAAGATGATGGATGGATCAGCAGGCAGGGAGGCCAGGCCGAGCA
GGCCCAAGACAAGACGACGGCCCACGGCATTGGCACCATGCGCGGGCAAGCGCGGGAGATCGCGCGAGGCACGCGCGCGC
AGTGGACACGCGGCGGCAAGGAATTCGGCGCGTGCGGGCGTGGGGTCCACGCTGTTTCAAGTGGCTCGGAGGCGGGAGTT
GTACTGGGACCCACGCGCGATTTCGCGAGCATGCGCGGGAGCAGCTCGGCGGGACGCGTGGAGGCTTTGGACTGGATGCG
CGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis