Browse Element(s) Details


OsAffx.17993.1.S1_at

Description tigr:9637.m02955
TID=OsAffx.17993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3424010/11hypothetical protein
LOC_Os03g422501/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230Os.10546.1.S1_s_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34230OsAffx.30138.1.S1_at11/119+20213904..20215700UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34240OsAffx.17993.1.S1_at10/119+20218376..20219892hypothetical protein
LOC_Os09g34250Os.48216.1.S1_at11/119+20221695..20223511UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34260OsAffx.10665.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55138.1.S1_x_at2/119+20223751..20224881hypothetical protein
LOC_Os09g34260OsAffx.20707.2.S1_x_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34260Os.55476.1.S1_at1/119+20223751..20224881hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_x_at11/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.28370.1.S1_at9/119+20228189..20233470hypothetical protein
LOC_Os09g34270OsAffx.20187.1.S1_at3/119+20228189..20233470hypothetical protein
LOC_Os09g34280Os.9097.1.A1_at11/119+20235938..20240135ankyrin repeat family protein, putative, expressed
LOC_Os09g34290OsAffx.30140.1.S1_at11/119+20241008..20242592hypothetical protein
LOC_Os09g34300Os.10518.1.S1_at11/119+20243173..20248047Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17993.1.S1_at--742--5872Chr12:12564770..12564793 (24 bp)
GAGCCGAGCGGCTTCGGTTTCGACT
NONE
OsAffx.17993.1.S1_at--777--7773Chr12:12564794..12564818 (25 bp)
GGTGCCGGGCAAACGGATCTGACTA
NONE
OsAffx.17993.1.S1_at--346--7971NONE
GGATCTGACTAACATTCCTCTGAGA
NONE
OsAffx.17993.1.S1_at--209--51Chr09:20218775..20218799 (25 bp)
ATTGTACGACAATTGCCATCCTTTA
LOC_Os09g34240
OsAffx.17993.1.S1_at--116--91Chr09:20218786..20218810 (25 bp)
ATTGCCATCCTTTAGCATTCCTATT
LOC_Os09g34240
OsAffx.17993.1.S1_at--926--5391Chr09:20219680..20219704 (25 bp)
GAAGCTCAGATGTCACTGGTGACGA
LOC_Os09g34240
OsAffx.17993.1.S1_at--470--10751Chr09:20219708..20219732 (25 bp)
TTGAGAGCCCAATGACGTCACTAGC
LOC_Os09g34240
OsAffx.17993.1.S1_at--287--9971Chr09:20219737..20219761 (25 bp)
TACCTGGCACTTAACTGGTCTCGAA
LOC_Os09g34240
OsAffx.17993.1.S1_at--217--2571Chr09:20219749..20219773 (25 bp)
AACTGGTCTCGAAAGCTCATTGATG
LOC_Os09g34240
OsAffx.17993.1.S1_at--322--8231Chr09:20219798..20219822 (25 bp)
GGCAATGCTATTGCTATCCCATTTG
LOC_Os09g34240
OsAffx.17993.1.S1_at--258--551Chr09:20219813..20219837 (25 bp)
ATCCCATTTGTGATTCGTCCCGTTT
LOC_Os09g34240
Target Sequence 
GAGCCGAGCGGCTTCGGTTTCGACTGGGTGCCGGGCAAACGGATCTGACTAACATTCCTCTGAGATTATTGTACGACAAT
TGCCATCCTTTAGCATTCCTATTAAATTATTGCAACAAAGAAGCTCAGATGTCACTGGTGACGAAGATTGAGAGCCCAAT
GACGTCACTAGCTCCCTACCTGGCACTTAACTGGTCTCGAAAGCTCATTGATGCACGGAACAAAAATATGGAAATAAGGC
AATGCTATTGCTATCCCATTTGTGATTCGTCCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis