Browse Element(s) Details


OsAffx.18005.1.S1_at

Description tigr:9637.m03031
TID=OsAffx.18005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cytochrome P-450LXXIA1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3607011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18005.1.S1_at--739--1731Chr09:20769751..20769775 (25 bp)
ACCTCGTTCGTGACCCTAGAATGGA
LOC_Os09g36070
OsAffx.18005.1.S1_at--1154--8911Chr09:20769779..20769803 (25 bp)
TGACGGAGCTGATTCGAAACACGCA
LOC_Os09g36070
OsAffx.18005.1.S1_at--927--2471Chr09:20769796..20769820 (25 bp)
AACACGCAGGTGATGTCCAAGCTAC
LOC_Os09g36070
OsAffx.18005.1.S1_at--1106--1271Chr09:20769827..20769851 (25 bp)
AGATCATACAAGTCACTGGCTCCAA
LOC_Os09g36070
OsAffx.18005.1.S1_at--236--8651Chr09:20770051..20770075 (25 bp)
TGGGACACACCGGATGAGTTTAGAC
LOC_Os09g36070
OsAffx.18005.1.S1_at--278--1711Chr09:20770074..20770098 (25 bp)
ACCAGAGCGGTTTATGGGCAGTGCA
LOC_Os09g36070
OsAffx.18005.1.S1_at--772--10811Chr09:20770153..20770177 (25 bp)
TTGTGCCCTGGCATCATCTTAGCAT
LOC_Os09g36070
OsAffx.18005.1.S1_at--744--6251Chr09:20770191..20770215 (25 bp)
GATGGTGATCGCTAGCTTGTTGTAC
LOC_Os09g36070
OsAffx.18005.1.S1_at--761--4691Chr09:20770205..20770229 (25 bp)
GCTTGTTGTACCACTTCGATTGGGA
LOC_Os09g36070
OsAffx.18005.1.S1_at--989--4791Chr09:20770230..20770254 (25 bp)
GCTCCCTGATGGCATGGACGTGCAA
LOC_Os09g36070
OsAffx.18005.1.S1_at--188--1271Chr09:20770254..20770278 (25 bp)
AGATCTAGATATGGCCGAGGCACCG
LOC_Os09g36070
Target Sequence 
ACCTCGTTCGTGACCCTAGAATGGATCATGACGGAGCTGATTCGAAACACGCAGGTGATGTCCAAGCTACAAAACGAGAT
CATACAAGTCACTGGCTCCAAACCAACCGTCACAGAAGAGGACCTAACCAAATTGGACTACCTAAAAGCAGTCATCAAGG
AGGTACTCCGGCTACACCCACCAGCGCCGCTTCTCATCCCACACCACTCAACGATGCCGACCACCATCCAAGGCTACCAC
ATTCCGGCCAAGACCATCGCCTTCATCAACGTGTGGGCGATCGGGAGGGACCCTGCGGCGTGGGACACACCGGATGAGTT
TAGACCAGAGCGGTTTATGGGCAGTGCAGTGGATTTCAGGGGCAACGACTATAAGTTCATACCATTTGGGGCTGGCCGGA
GGTTGTGCCCTGGCATCATCTTAGCATTGCCAGGATTGGAGATGGTGATCGCTAGCTTGTTGTACCACTTCGATTGGGAG
CTCCCTGATGGCATGGACGTGCAAGATCTAGATATGGCCGAGGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis