Browse Element(s) Details


OsAffx.18289.1.S1_at

Description gb:NM_195759.1
DB_XREF= gi:37532877
TID=OsAffx.18289.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0008A05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1841010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18289.1.S1_at--353--5071Chr10:9030780..9030804 (25 bp)
GCAGCCATGGACTTGTACGTCCCTT
NONE
OsAffx.18289.1.S1_at--478--8531Chr10:9030787..9030811 (25 bp)
TGGACTTGTACGTCCCTTCCGTCTA
LOC_Os10g18410
OsAffx.18289.1.S1_at--42--9951Chr10:9030810..9030834 (25 bp)
TACGCCTGGAACACCGACGCCAGTG
LOC_Os10g18410
OsAffx.18289.1.S1_at--463--4351Chr10:9030829..9030853 (25 bp)
CCAGTGGTGCGGAGGCGCCTTCCAA
LOC_Os10g18410
OsAffx.18289.1.S1_at--815--4551Chr10:9030843..9030867 (25 bp)
GCGCCTTCCAACGACAAGATCAAGA
LOC_Os10g18410
OsAffx.18289.1.S1_at--159--7331Chr10:9030882..9030906 (25 bp)
GTGCTTGCCAGGTTTCCTCACCTTG
LOC_Os10g18410
OsAffx.18289.1.S1_at--648--10271Chr10:9030894..9030918 (25 bp)
TTTCCTCACCTTGCCGGGAGGTTCT
LOC_Os10g18410
OsAffx.18289.1.S1_at--700--1011Chr10:9030912..9030936 (25 bp)
AGGTTCTTCGGCGTTGACGAGCACG
LOC_Os10g18410
OsAffx.18289.1.S1_at--171--5831Chr10:9030930..9030954 (25 bp)
GAGCACGGCCGGAGGTACTTCGACC
LOC_Os10g18410
OsAffx.18289.1.S1_at--157--8411Chr10:9030936..9030960 (25 bp)
GGCCGGAGGTACTTCGACCTCAACG
LOC_Os10g18410
OsAffx.18289.1.S1_at--203--10711Chr10:9031003..9031027 (25 bp)
TTGCCGACGCTTTGTCGCACGACGT
LOC_Os10g18410
Target Sequence 
GCAGCCATGGACTTGTACGTCCCTTCCGTCTACGCCTGGAACACCGACGCCAGTGGTGCGGAGGCGCCTTCCAACGACAA
GATCAAGAACAGCCTCGCCGCCGTGCTTGCCAGGTTTCCTCACCTTGCCGGGAGGTTCTTCGGCGTTGACGAGCACGGCC
GGAGGTACTTCGACCTCAACGACGCTGGGGCTCTCGTCCTCGAAGCCACAGCGTCCGCCAGCCTTGCCGACGCTTTGTCG
CACGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis