Browse Element(s) Details


OsAffx.18290.1.S1_at

Description tigr:9638.m01535
TID=OsAffx.18290.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1843011/11agmatine coumaroyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g18450OsAffx.30829.1.A1_at11/1110+9045662..9046599expressed protein
LOC_Os10g18460OsAffx.18291.1.S1_at9/1110+9049931..9050919hypothetical protein
LOC_Os10g18470OsAffx.20523.1.S1_x_at11/1110+9052638..9053192expressed protein
LOC_Os10g18470OsAffx.20523.1.S1_at11/1110+9052638..9053192expressed protein
LOC_Os10g18480Os.25230.2.A1_at4/1110+9054309..9055175Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os10g18490NANA10+9057750..9058355Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g18500OsAffx.6691.1.S1_at11/1110+9059072..9059563hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18290.1.S1_at--574--4231Chr10:9035882..9035906 (25 bp)
CCGACGAGCCGCTGTTGCAGGTGCA
LOC_Os10g18430
OsAffx.18290.1.S1_at--370--1871Chr10:9035885..9035909 (25 bp)
ACGAGCCGCTGTTGCAGGTGCAGCT
LOC_Os10g18430
OsAffx.18290.1.S1_at--696--3471Chr10:9035899..9035923 (25 bp)
CAGGTGCAGCTGACACGGGACACGT
LOC_Os10g18430
OsAffx.18290.1.S1_at--802--8951Chr10:9035909..9035933 (25 bp)
TGACACGGGACACGTGCGGCGGGCT
LOC_Os10g18430
OsAffx.18290.1.S1_at--829--7571Chr10:9035929..9035953 (25 bp)
GGGCTGGTGATCAGTGTCACTGCCC
LOC_Os10g18430
OsAffx.18290.1.S1_at--999--8611Chr10:9035933..9035957 (25 bp)
TGGTGATCAGTGTCACTGCCCACCA
LOC_Os10g18430
OsAffx.18290.1.S1_at--1083--7751Chr10:9035934..9035958 (25 bp)
GGTGATCAGTGTCACTGCCCACCAC
LOC_Os10g18430
OsAffx.18290.1.S1_at--838--1931Chr10:9035969..9035993 (25 bp)
ACGGCAAGTCCATGAGCGTCTTCTT
LOC_Os10g18430
OsAffx.18290.1.S1_at--1115--5171Chr10:9035972..9035996 (25 bp)
GCAAGTCCATGAGCGTCTTCTTCGT
LOC_Os10g18430
OsAffx.18290.1.S1_at--244--4691Chr10:9036004..9036028 (25 bp)
GCGGCAGCCGTGCACACCCGTGAGA
LOC_Os10g18430
OsAffx.18290.1.S1_at--156--5491Chr10:9036039..9036063 (25 bp)
GACGCCGTTCCATGACCGTGGGGTC
LOC_Os10g18430
Target Sequence 
CCGACGAGCCGCTGTTGCAGGTGCAGCTGACACGGGACACGTGCGGCGGGCTGGTGATCAGTGTCACTGCCCACCACCAT
GTCGCCGACGGCAAGTCCATGAGCGTCTTCTTCGTCGCGTGGGCGGCAGCCGTGCACACCCGTGAGACCCTCCTCCCGAC
GCCGTTCCATGACCGTGGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis