Browse Element(s) Details


OsAffx.18359.1.S1_at

Description tigr:9638.m01977
TID=OsAffx.18359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2323011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein
LOC_Os10g23260OsAffx.18361.1.S1_at11/1110+11812688..11813821hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18359.1.S1_at--352--8371Chr10:11788767..11788791 (25 bp)
GGCGTGCCCGCACTGCTGCTACGTC
LOC_Os10g23230
OsAffx.18359.1.S1_at--671--5091Chr10:11788633..11788657 (25 bp)
GCACCGACATGTACTTCTGCACCTG
LOC_Os10g23230
OsAffx.18359.1.S1_at--565--4211Chr10:11788630..11788654 (25 bp)
CCGACATGTACTTCTGCACCTGGGC
LOC_Os10g23230
OsAffx.18359.1.S1_at--980--2091Chr10:11788627..11788651 (25 bp)
ACATGTACTTCTGCACCTGGGCCTT
LOC_Os10g23230
OsAffx.18359.1.S1_at--872--4471Chr10:11788478..11788502 (25 bp)
GCCGGTGGCCCCACGTCGAGGAAGA
LOC_Os10g23230
OsAffx.18359.1.S1_at--700--8191Chr10:11788459..11788483 (25 bp)
GGAAGAAGATGTGCGTGTCCCTCAA
LOC_Os10g23230
OsAffx.18359.1.S1_at--136--2751Chr10:11788457..11788481 (25 bp)
AAGAAGATGTGCGTGTCCCTCAAGG
LOC_Os10g23230
OsAffx.18359.1.S1_at--912--1451Chr10:11788456..11788480 (25 bp)
AGAAGATGTGCGTGTCCCTCAAGGG
LOC_Os10g23230
OsAffx.18359.1.S1_at--874--1731Chr10:11788373..11788397 (25 bp)
ACCATCATCGATCTCGAGCCGGAGG
LOC_Os10g23230
OsAffx.18359.1.S1_at--1031--411Chr10:11788370..11788394 (25 bp)
ATCATCGATCTCGAGCCGGAGGTGC
LOC_Os10g23230
OsAffx.18359.1.S1_at--769--5011Chr10:11788347..11788371 (25 bp)
GCAGGAGGGCGGGATTGGCGAGAAG
LOC_Os10g23230
Target Sequence 
GGCGTGCCCGCACTGCTGCTACGTCCACTCCTACCCGCGCCACTACGCCGGGCGCCGCCTCCGCTGCCCGACCGCCGCCT
GCCGCCGCGCCTTCTCCGCCGCCGAGCTCCCCGCCGCGCCGCCCATCGTCCCGGGCACCGACATGTACTTCTGCACCTGG
GCCTTCTTCCCGCTCGGCCCCCCCGCCGCCGCCGCCGACGGGTGGGCCCCCTTCACCCCCTTCAACTCCGCCCCGACCCC
CTCCCCTCCCCCCGCCACCGCCGCCGCCCCCGCCCCCGCCCCCGCTCGCGCCGGTGGCCCCACGTCGAGGAAGAAGATGT
GCGTGTCCCTCAAGGGGAGGGCCCGCGTGGAGGCGGAGCAGGAGGAGGAGGAGGAGGAGGCCGCGGCCGCCGCCACCATC
ATCGATCTCGAGCCGGAGGTGCAGGAGGGCGGGATTGGCGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis