Browse Element(s) Details


OsAffx.18404.1.S1_at

Description tigr:9638.m02222
TID=OsAffx.18404.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2611011/11Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004837molecular_functiontyrosine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18404.1.S1_at--646--9851Chr10:13193377..13193401 (25 bp)
TACAAGGACTGGCAGATCTCGCTGT
LOC_Os10g26110
OsAffx.18404.1.S1_at--1044--5731Chr10:13193371..13193395 (25 bp)
GACTGGCAGATCTCGCTGTCGCGGC
LOC_Os10g26110
OsAffx.18404.1.S1_at--1022--9291Chr10:13193343..13193367 (25 bp)
TCCGCGCCATGAAGCTCTGGTTCGT
LOC_Os10g26110
OsAffx.18404.1.S1_at--402--671Chr10:13193335..13193359 (25 bp)
ATGAAGCTCTGGTTCGTGCTGCGGC
LOC_Os10g26110
OsAffx.18404.1.S1_at--501--8471Chr10:13193211..13193235 (25 bp)
TGGCGAAGAGGAGGTTCTCCCTCGT
LOC_Os10g26110
OsAffx.18404.1.S1_at--384--1331Chr10:13193205..13193229 (25 bp)
AGAGGAGGTTCTCCCTCGTGTGCTT
LOC_Os10g26110
OsAffx.18404.1.S1_at--1095--8351Chr10:13193109..13193133 (25 bp)
GGCGGGCGTTCATGACGCACTTCGT
LOC_Os10g26110
OsAffx.18404.1.S1_at--930--4031Chr10:13193103..13193127 (25 bp)
CGTTCATGACGCACTTCGTGGTGGA
LOC_Os10g26110
OsAffx.18404.1.S1_at--428--1072Chr10:13193079..13193103 (25 bp)
AGGGCAAGTTCGTGATCCGGCTCGC
LOC_Os10g26110
OsAffx.18404.1.S1_at--942--5171Chr10:13193076..13193100 (25 bp)
GCAAGTTCGTGATCCGGCTCGCCGT
LOC_Os10g26110
OsAffx.18404.1.S1_at--383--4171Chr10:13193045..13193069 (25 bp)
CGCCATGACGGAGATGAGGCATGTC
LOC_Os10g26110
Target Sequence 
TACAAGGACTGGCAGATCTCGCTGTCGCGGCGGTTCCGCGCCATGAAGCTCTGGTTCGTGCTGCGGCGGTACGGCGCTGC
GGGCATGCGCGCGCACATCCGGCGCCACGTCGCCATGGCCGAGTGGTTCGAGCGCGCGGTGAGCGCCGACGAGCGGTTCG
AGGTGGTGGCGAAGAGGAGGTTCTCCCTCGTGTGCTTCCGCCTCCGCGGCGGCGGCGGCGGCGGCGACGCGATGAACCGC
GAGCTCCTGGCGGCGGTGAACGCGAGCGGGCGGGCGTTCATGACGCACTTCGTGGTGGAGGGCAAGTTCGTGATCCGGCT
CGCCGTCGGCGGCGCCATGACGGAGATGAGGCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis