Browse Element(s) Details


OsAffx.18571.1.S1_at

Description tigr:9638.m03491
TID=OsAffx.18571.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3879010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18571.1.S1_at--316--2751Chr10:20317441..20317465 (25 bp)
AAGAACGTGCTGAGGCTATTCGGCT
LOC_Os10g38790
OsAffx.18571.1.S1_at--485--6211Chr10:20317452..20317476 (25 bp)
GAGGCTATTCGGCTGCAAACTGCAG
LOC_Os10g38790
OsAffx.18571.1.S1_at--1025--9031NONE
TGCAGCGGCAACCTATCACAATCTT
NONE
OsAffx.18571.1.S1_at--1054--9691Chr10:20317609..20317633 (25 bp)
TCACAATCTTGACTCTTCTAACTGC
LOC_Os10g38790
OsAffx.18571.1.S1_at--40--9811Chr10:20317627..20317651 (25 bp)
TAACTGCAAGCGTACACTGACATCG
LOC_Os10g38790
OsAffx.18571.1.S1_at--471--1971Chr10:20317642..20317666 (25 bp)
ACTGACATCGCATCTGGGCTTGGGT
LOC_Os10g38790
OsAffx.18571.1.S1_at--158--4931Chr10:20317659..20317683 (25 bp)
GCTTGGGTCATGATCGCGAGTTCGC
LOC_Os10g38790
OsAffx.18571.1.S1_at--759--4131Chr10:20317673..20317697 (25 bp)
CGCGAGTTCGCGACCAACAAACGGT
LOC_Os10g38790
OsAffx.18571.1.S1_at--30--3291Chr10:20317690..20317714 (25 bp)
CAAACGGTCTCTTTTGATTGGGCCG
LOC_Os10g38790
OsAffx.18571.1.S1_at--764--9511Chr10:20317697..20317721 (25 bp)
TCTCTTTTGATTGGGCCGTACCGGA
LOC_Os10g38790
OsAffx.18571.1.S1_at--1144--4211Chr10:20318106..20318130 (25 bp)
CCGCAACTGTTCCAGCACAGGGAGA
LOC_Os10g38790
Target Sequence 
AAGAACGTGCTGAGGCTATTCGGCTGCAAACTGCAGCGGCAACCTATCACAATCTTGACTCTTCTAACTGCAAGCGTACA
CTGACATCGCATCTGGGCTTGGGTCATGATCGCGAGTTCGCGACCAACAAACGGTCTCTTTTGATTGGGCCGTACCGGAT
GGCGACGAAGATGAAGCGGGCGCTCTACCACCTGTTCCACCCGCAACTGTTCCAGCACAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis