Browse Element(s) Details


OsAffx.18661.1.S1_at

Description tigr:9640.m00336
TID=OsAffx.18661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calcium-translocating P-type ATPase, PMCA-type
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0422011/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g044602/11Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g318301/11hydrolase, carbon-nitrogen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04180Os.12347.3.S1_at11/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04180Os.12347.4.S1_x_at9/1112+1754561..1758696RNA recognition motif family protein, expressed
LOC_Os12g04200NANA12+1765096..1766963GRAS family transcription factor containing protein
LOC_Os12g04210Os.52118.1.S1_at11/1112+1775603..1776673expressed protein
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0006810biological_processtransport
GO:0009446biological_processputrescine biosynthesis
GO:0005773cellular_componentvacuole
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0000257molecular_functionnitrilase activity
GO:0005262molecular_functioncalcium channel activity
GO:0005388molecular_functioncalcium-transporting ATPase activity
GO:0005516molecular_functioncalmodulin binding
GO:0015085molecular_functioncalcium ion transporter activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18661.1.S1_at--563--2252Chr12:1788676..1788700 (25 bp)
AAATTTTGCCAAACTCCTGTCATGT
LOC_Os12g04220
OsAffx.18661.1.S1_at--298--10393Chr12:1788679..1788703 (25 bp)
TTTTGCCAAACTCCTGTCATGTAAT
LOC_Os12g04220
OsAffx.18661.1.S1_at--524--4392Chr12:1788683..1788707 (25 bp)
GCCAAACTCCTGTCATGTAATTGTT
LOC_Os12g04220
OsAffx.18661.1.S1_at--191--2552Chr12:1788687..1788711 (25 bp)
AACTCCTGTCATGTAATTGTTACTA
LOC_Os12g04220
OsAffx.18661.1.S1_at--445--32Chr12:1788702..1788726 (25 bp)
ATTGTTACTACATCACACGTTACTG
LOC_Os12g04220
OsAffx.18661.1.S1_at--917--2171Chr12:1788716..1788740 (25 bp)
ACACGTTACTGATGTGCACCCTTAC
LOC_Os12g04220
OsAffx.18661.1.S1_at--823--6771Chr12:1788720..1788744 (25 bp)
GTTACTGATGTGCACCCTTACCACT
LOC_Os12g04220
OsAffx.18661.1.S1_at--227--10472Chr12:1788737..1788761 (25 bp)
TTACCACTCTGCTTTCAACTTCAGA
LOC_Os12g04220
OsAffx.18661.1.S1_at--782--9071Chr12:1788746..1788770 (25 bp)
TGCTTTCAACTTCAGACTTCATTGT
LOC_Os12g04220
OsAffx.18661.1.S1_at--407--2051Chr12:1788754..1788778 (25 bp)
ACTTCAGACTTCATTGTATCAGTGA
LOC_Os12g04220
OsAffx.18661.1.S1_at--316--1411Chr12:1788759..1788783 (25 bp)
AGACTTCATTGTATCAGTGAATTCA
LOC_Os12g04220
Target Sequence 
AAATTTTGCCAAACTCCTGTCATGTAATTGTTACTACATCACACGTTACTGATGTGCACCCTTACCACTCTGCTTTCAAC
TTCAGACTTCATTGTATCAGTGAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis