Browse Element(s) Details


OsAffx.18711.1.S1_at

Description tigr:9639.m00605
TID=OsAffx.18711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g067109/11hypothetical protein
LOC_Os06g241502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g309501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18711.1.S1_at--10--691Chr11:3266717..3266741 (25 bp)
ATGACGGCAGCGAGGCGAACTCAAC
LOC_Os11g06710
OsAffx.18711.1.S1_at--208--6216Chr06:14132518..14132542 (25 bp)
GAGGCGAACTCAACGACGGCAACTG
LOC_Os06g24150
OsAffx.18711.1.S1_at--918--9714Chr06:14132527..14132551 (25 bp)
TCAACGACGGCAACTGAGACCCCAA
LOC_Os06g24150
OsAffx.18711.1.S1_at--604--1932Chr11:3266691..3266715 (25 bp)
ACGGCAACTGAGACCCCAACAACAG
LOC_Os11g06710
OsAffx.18711.1.S1_at--1055--5153Chr01:34355513..34355537 (25 bp)
GCAACCAAATTGCATCTGGCCATAT
NONE
OsAffx.18711.1.S1_at--1123--3293Chr01:34355518..34355542 (25 bp)
CAAATTGCATCTGGCCATATCGTCT
NONE
OsAffx.18711.1.S1_at--610--493Chr01:34355526..34355550 (25 bp)
ATCTGGCCATATCGTCTCGGCGGAG
NONE
OsAffx.18711.1.S1_at--106--511NONE
ATCGTCTCGGCGGAGCATGCATATT
NONE
OsAffx.18711.1.S1_at--698--9451NONE
TCGGCGGAGCATGCATATTGGTTGA
NONE
OsAffx.18711.1.S1_at--590--1692Chr02:18484973..18484997 (25 bp)
AGCCAGGTCCATCCATGCTTGCGTG
LOC_Os02g30950
OsAffx.18711.1.S1_at--404--631Chr11:3265591..3265615 (25 bp)
ATGCTTGCGTGTGGCCAGCACAGGC
LOC_Os11g06710
Target Sequence 
ATGACGGCAGCGAGGCGAACTCAACGACGGCAACTGAGACCCCAACAACAGCAACCAAATTGCATCTGGCCATATCGTCT
CGGCGGAGCATGCATATTGGTTGATTTGCCATCAATCTTGTGCATGGACGCCAGGAGCCAGGTCCATCCATGCTTGCGTG
TGGCCAGCACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis