Browse Element(s) Details


OsAffx.18745.1.S1_at

Description tigr:9639.m00766
TID=OsAffx.18745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0817011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08120NANA11+4258810..4261206Cyanogenic beta-glucosidase precursor, putative
LOC_Os11g08130NANA11+4265355..4266062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08140OsAffx.8847.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08140OsAffx.8338.1.S1_x_at1/1111+4268050..4269289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.3.S1_x_at4/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_at2/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08150OsAffx.22848.4.S1_x_at1/1111+4270222..4274732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08160Os.11510.1.S1_s_at1/1111+4278565..4279021transposon protein, putative, unclassified
LOC_Os11g08170OsAffx.18745.1.S1_at11/1111+4281044..4281400hypothetical protein
LOC_Os11g08180OsAffx.18744.1.S1_x_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.18744.1.S1_at10/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08180OsAffx.14069.1.S1_at1/1111+4283830..4284255Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08190NANA11+4284877..4287163Aspartic proteinase Asp1 precursor, putative
LOC_Os11g08200Os.50636.1.S1_s_at11/1111+4291064..4293357Aspartic proteinase Asp1 precursor, putative, expressed
LOC_Os11g08210Os.4385.1.S1_at11/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_x_at10/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed
LOC_Os11g08210Os.51926.1.S1_at8/1111+4295057..4297685NAC-domain containing protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18745.1.S1_at--573--4231Chr11:4281132..4281156 (25 bp)
CCGACGTGTGCCAGTTCAGGTGCGC
LOC_Os11g08170
OsAffx.18745.1.S1_at--857--4091Chr11:4281169..4281193 (25 bp)
CGACAGGGAGAAGGCCTACTGCGAC
LOC_Os11g08170
OsAffx.18745.1.S1_at--330--551Chr11:4281269..4281293 (25 bp)
ATCCCGGCGTGCAGGATCAAGTGCA
LOC_Os11g08170
OsAffx.18745.1.S1_at--397--6451Chr11:4281283..4281307 (25 bp)
GATCAAGTGCAAGAGCGTGTTCCGT
LOC_Os11g08170
OsAffx.18745.1.S1_at--88--1131Chr11:4281288..4281312 (25 bp)
AGTGCAAGAGCGTGTTCCGTGACCC
LOC_Os11g08170
OsAffx.18745.1.S1_at--5--5171Chr11:4281291..4281315 (25 bp)
GCAAGAGCGTGTTCCGTGACCCCGG
LOC_Os11g08170
OsAffx.18745.1.S1_at--77--8911Chr11:4281307..4281331 (25 bp)
TGACCCCGGGAGAGCCTTCTGCCAG
LOC_Os11g08170
OsAffx.18745.1.S1_at--892--8051Chr11:4281315..4281339 (25 bp)
GGAGAGCCTTCTGCCAGGACGGATC
LOC_Os11g08170
OsAffx.18745.1.S1_at--171--9491Chr11:4281324..4281348 (25 bp)
TCTGCCAGGACGGATCGCCCGGTTT
LOC_Os11g08170
OsAffx.18745.1.S1_at--923--7911Chr11:4281335..4281359 (25 bp)
GGATCGCCCGGTTTCGGAGACTCTT
LOC_Os11g08170
OsAffx.18745.1.S1_at--466--7871Chr11:4281344..4281368 (25 bp)
GGTTTCGGAGACTCTTGCTGCTGCC
LOC_Os11g08170
Target Sequence 
CCGACGTGTGCCAGTTCAGGTGCGCCGTGATGGGCGGCGACAGGGAGAAGGCCTACTGCGACGCCGCCACCGGCAGGTGC
TGCTGCCCGCCGGGATCGGCGACGCTCTGCCGCCCGCTCGCCGGCTGCCGGAGCCGCATCCCGGCGTGCAGGATCAAGTG
CAAGAGCGTGTTCCGTGACCCCGGGAGAGCCTTCTGCCAGGACGGATCGCCCGGTTTCGGAGACTCTTGCTGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis