Browse Element(s) Details


OsAffx.18753.1.S1_at

Description tigr:9639.m00819
TID=OsAffx.18753.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0869811/11hypothetical protein
LOC_Os11g0891811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18753.1.S1_at--879--1892Chr11:4713797..4713821 (25 bp)
ACGTAGCGTCGTGCCTCAGGGTGTA
LOC_Os11g08918
OsAffx.18753.1.S1_at--1122--7232Chr11:4713841..4713865 (25 bp)
GTCGCCAAGTCGCAGGATAACGAGC
LOC_Os11g08918
OsAffx.18753.1.S1_at--886--332Chr11:4713857..4713881 (25 bp)
ATAACGAGCAGCTCTACACACGGCT
LOC_Os11g08918
OsAffx.18753.1.S1_at--641--2172Chr11:4713874..4713898 (25 bp)
ACACGGCTGTACGACTACTGTGGAG
LOC_Os11g08918
OsAffx.18753.1.S1_at--758--8032Chr11:4713895..4713919 (25 bp)
GGAGTCAAGATCTACGAGGCCTCAT
LOC_Os11g08918
OsAffx.18753.1.S1_at--693--4292Chr11:4713914..4713938 (25 bp)
CCTCATCGCTCGCAGAATCCATGAT
LOC_Os11g08918
OsAffx.18753.1.S1_at--559--10752Chr11:4714070..4714094 (25 bp)
TTGACGCCATCCAGACCTGCGGAAA
LOC_Os11g08918
OsAffx.18753.1.S1_at--34--3712Chr11:4714118..4714142 (25 bp)
CTATGATCCACCAGAATCTCACCGT
LOC_Os11g08918
OsAffx.18753.1.S1_at--903--3512Chr11:4714218..4714242 (25 bp)
CATCCTCGCCACAAAGTTCAAGTAT
LOC_Os11g08918
OsAffx.18753.1.S1_at--965--432Chr11:4714286..4714310 (25 bp)
ATCTTTCTGAGACTGCCACCGGTGC
LOC_Os11g08918
OsAffx.18753.1.S1_at--47--4412Chr11:4714300..4714324 (25 bp)
GCCACCGGTGCTAAACATAAGACGA
LOC_Os11g08918
Target Sequence 
ACGTAGCGTCGTGCCTCAGGGTGTACCCAACACTCCCGGACGACGTCGCCAAGTCGCAGGATAACGAGCAGCTCTACACA
CGGCTGTACGACTACTGTGGAGTCAAGATCTACGAGGCCTCATCGCTCGCAGAATCCATGATTGCAACCACCACCGCCGC
CGACCCCGTGATCATCGCCACCTTCTTCCCGCAGTGGAAAGGGGACGAGGCGATAACGACAAAAACACATCCCGGCAAGT
GCCTCTTGAGCTGCAACAAGACCATCGGCGACGTTGACGCCATCCAGACCTGCGGAAACACCTACATGGAAGACAGGCCC
CCTATGATCCACCAGAATCTCACCGTCTTGTTCCACGGCGGCCACCCGCTGCCGCTCTGCAAGAGTGGATGCTCGGAGAG
GTCGTCTTCGGAGGGCGAGGCCATCCTCGCCACAAAGTTCAAGTATATATGGACCTTGTTGGATCTCCTGGAAGCTGTCC
TCCCGGAATATCTTTCTGAGACTGCCACCGGTGCTAAACATAAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis