Browse Element(s) Details


OsAffx.18923.1.S1_at

Description tigr:9639.m01706
TID=OsAffx.18923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1847011/11hypothetical protein
LOC_Os11g229402/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18410OsAffx.18275.1.S1_x_at3/1111+10367744..10370513hypothetical protein
LOC_Os11g18410OsAffx.30486.1.S1_at1/1111+10367744..10370513hypothetical protein
LOC_Os11g18420NANA11+10374409..10376058retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g18430NANA11+10377367..10379170retrotransposon protein, putative, unclassified
LOC_Os11g18440NANA11+10379975..10380451retrotransposon protein, putative, unclassified
LOC_Os11g18450OsAffx.3761.1.S1_x_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18450OsAffx.19577.1.A1_at1/1111+10380870..10384750hypothetical protein
LOC_Os11g18470OsAffx.18923.1.S1_at11/1111+10394387..10395504hypothetical protein
LOC_Os11g18480OsAffx.7145.1.S1_at11/1111+10397702..10399827hypothetical protein
LOC_Os11g18490OsAffx.30891.1.S1_x_at2/1111+10403581..10404297hypothetical protein
LOC_Os11g18500OsAffx.7146.1.S1_at11/1111+10405778..10408635hypothetical protein
LOC_Os11g18500OsAffx.29376.1.S1_x_at1/1111+10405778..10408635hypothetical protein
LOC_Os11g18510Os.46314.2.S1_x_at6/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.22421.1.S1_at3/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.47114.1.S1_x_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510OsAffx.32036.1.S1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18510Os.10731.2.A1_at1/1111+10413298..10416423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.2.S1_at2/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18520OsAffx.22421.3.S1_at1/1111+10417433..10419371transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18923.1.S1_at--925--4511Chr11:10395264..10395288 (25 bp)
GCCCCGGGCCTTGAGCACGTTAAGG
LOC_Os11g18470
OsAffx.18923.1.S1_at--692--8292Chr11:10395184..10395208 (25 bp)
GGCTTTGGCCGCAATTGCGGGCATC
LOC_Os11g18470
OsAffx.18923.1.S1_at--165--8271Chr11:10395165..10395189 (25 bp)
GGCATCGCTCTGTTAAATGTCGGAG
LOC_Os11g18470
OsAffx.18923.1.S1_at--713--7691Chr11:10395116..10395140 (25 bp)
GGGTCATCCAAGTGACAGTGACTCA
LOC_Os11g18470
OsAffx.18923.1.S1_at--845--5652Chr11:12710118..12710142 (25 bp)
GACAGTGACTCATCACAGGACACCC
LOC_Os11g22940
OsAffx.18923.1.S1_at--832--6131Chr11:10394570..10394594 (25 bp)
GAGGGTCCGCCTGGATAGCTACAAG
LOC_Os11g18470
OsAffx.18923.1.S1_at--403--6491Chr11:10394557..10394581 (25 bp)
GATAGCTACAAGTCCTGCTTAGAGG
LOC_Os11g18470
OsAffx.18923.1.S1_at--1078--2431Chr11:10394508..10394532 (25 bp)
AAAAGGAGGTGCTCGCGAGTTCGCT
LOC_Os11g18470
OsAffx.18923.1.S1_at--156--6351Chr11:10394479..10394503 (25 bp)
GATGCGAACGCCGAGATCAAAAGAC
LOC_Os11g18470
OsAffx.18923.1.S1_at--517--2431Chr11:10394461..10394485 (25 bp)
AAAAGACTTAGGCTTGAGCTCGAGA
LOC_Os11g18470
OsAffx.18923.1.S1_at--630--2591Chr11:10394423..10394447 (25 bp)
AACGCAGGGCCTTGTGGACTACTAT
LOC_Os11g18470
Target Sequence 
GCCCCGGGCCTTGAGCACGTTAAGGCGGGGGCTGCTTCGAGCTCGTCCCCTCTTCGCCAGAAAGAGCAGGAGGGGGCGAA
GGCTTTGGCCGCAATTGCGGGCATCGCTCTGTTAAATGTCGGAGCGGGTGCAAAGTGGGCTGCGAGGGGGGTCATCCAAG
TGACAGTGACTCATCACAGGACACCCCCACTTCGCCAACCGGGCGAAGCCCGAGTCTGCCGGCCGCCGCCTCCGCTGCTG
GTTCTGCCGGTGAGGTGGGTGGGAGCTACGGGGCAGGCTCTTTCGGCTCAATGCTCGGTAGAGCAGATGGCGAGGGTCCG
CCTGGATAGCTACAAGTCCTGCTTAGAGGAAGAGCTGGGCCGAAAAGACCTTAAAAAGGAGGTGCTCGCGAGTTCGCTAA
AGGATGCGAACGCCGAGATCAAAAGACTTAGGCTTGAGCTCGAGAGGGAAAAAAGGGAAACGCAGGGCCTTGTGGACTAC
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis