Browse Element(s) Details


OsAffx.19113.1.S1_at

Description tigr:9639.m02910
TID=OsAffx.19113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3185011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31820OsAffx.31256.1.S1_at10/1111+18189218..18200738hypothetical protein
LOC_Os11g31830Os.41695.15.S1_s_at11/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.3.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.2.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.5.S1_x_at9/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.4.S1_x_at1/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31840OsAffx.19542.3.S1_x_at3/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.21754.1.S1_x_at2/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.9949.1.S1_at1/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31850OsAffx.19113.1.S1_at11/1111+18217074..18217733hypothetical protein
LOC_Os11g31860Os.54774.1.S1_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31860Os.54774.1.S1_x_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31870NANA11+18225427..18226635retrotransposon protein, putative, unclassified
LOC_Os11g31880OsAffx.19112.1.S1_at11/1111+18227666..18231752Fructose-2,6-bisphosphatase, putative
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19113.1.S1_at--625--2711Chr11:18217563..18217587 (25 bp)
AAGCAGGGCATATAGATCAAAAGAA
LOC_Os11g31850
OsAffx.19113.1.S1_at--907--3271Chr11:18217546..18217570 (25 bp)
CAAAAGAACCACCATTTTCTCACCT
LOC_Os11g31850
OsAffx.19113.1.S1_at--5--2351Chr11:18217544..18217568 (25 bp)
AAAGAACCACCATTTTCTCACCTCT
LOC_Os11g31850
OsAffx.19113.1.S1_at--178--9531Chr11:18217514..18217538 (25 bp)
TCTCTTGCTCACTCTTTGTTGGTGA
LOC_Os11g31850
OsAffx.19113.1.S1_at--331--6631Chr11:18217497..18217521 (25 bp)
GTTGGTGATTCTTGAAGCTGCTTCT
LOC_Os11g31850
OsAffx.19113.1.S1_at--1099--111Chr11:18217490..18217514 (25 bp)
ATTCTTGAAGCTGCTTCTCCTCCAT
LOC_Os11g31850
OsAffx.19113.1.S1_at--944--9911Chr11:18217425..18217449 (25 bp)
TACTGCTGCTGCTAGTGAACTCCCA
LOC_Os11g31850
OsAffx.19113.1.S1_at--17--9071Chr11:18217416..18217440 (25 bp)
TGCTAGTGAACTCCCAATCCAAATC
LOC_Os11g31850
OsAffx.19113.1.S1_at--113--4391Chr11:18217285..18217309 (25 bp)
CCAAGAACTGGTGGCTGCGGGCGCA
LOC_Os11g31850
OsAffx.19113.1.S1_at--438--8111Chr11:18217221..18217245 (25 bp)
GGACGCAGAGGACGAGCGCCCCGAG
LOC_Os11g31850
OsAffx.19113.1.S1_at--204--6011Chr11:18217196..18217220 (25 bp)
GAGAGAGCGGGTTCCGACCGACACC
LOC_Os11g31850
Target Sequence 
AAGCAGGGCATATAGATCAAAAGAACCACCATTTTCTCACCTCTCTCTCTCTCTTGCTCACTCTTTGTTGGTGATTCTTG
AAGCTGCTTCTCCTCCATCCTCCCTTCCTGCAGCTGCTGCTGCGCTTGTGTTGTCTTCTACTGCTGCTGCTAGTGAACTC
CCAATCCAAATCCTCCGACGCATCGAGGCCGGTGGTGGTGGCCGACGCGGTGGGTGGCGGCGAGGTCGACGGTGGTGGTG
GCCAACGCTGCCGCGGCAGCCGGGGGCGCCTCCCACCGCCAAGAACTGGTGGCTGCGGGCGCACCGGCGAGCCGCCGCCA
AGAACGAGGGAGAGGAGGTGGCGGACGCAGAGGACGAGCGCCCCGAGGAGAGAGCGGGTTCCGACCGACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis