Browse Element(s) Details


OsAffx.1926.1.S1_at

Description tigr:9629.m00329
TID=OsAffx.1926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g041309/11peptidyl-tRNA hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1926.1.S1_at--1052--4131NONE
CGCTGCTCGGAATAGGTTCGATTGG
NONE
OsAffx.1926.1.S1_at--555--7611Chr01:1812692..1812716 (25 bp)
GGGAAGTGCCTGTCTTGTTGGTAAA
LOC_Os01g04130
OsAffx.1926.1.S1_at--385--5331Chr01:1812690..1812714 (25 bp)
GAAGTGCCTGTCTTGTTGGTAAAGC
LOC_Os01g04130
OsAffx.1926.1.S1_at--921--1131Chr01:1812688..1812712 (25 bp)
AGTGCCTGTCTTGTTGGTAAAGCCA
LOC_Os01g04130
OsAffx.1926.1.S1_at--273--7291Chr01:1812687..1812711 (25 bp)
GTGCCTGTCTTGTTGGTAAAGCCAC
LOC_Os01g04130
OsAffx.1926.1.S1_at--683--4471Chr01:1812685..1812709 (25 bp)
GCCTGTCTTGTTGGTAAAGCCACAA
LOC_Os01g04130
OsAffx.1926.1.S1_at--1140--3811Chr01:1812683..1812707 (25 bp)
CTGTCTTGTTGGTAAAGCCACAATC
LOC_Os01g04130
OsAffx.1926.1.S1_at--35--7151Chr01:1812681..1812705 (25 bp)
GTCTTGTTGGTAAAGCCACAATCAT
LOC_Os01g04130
OsAffx.1926.1.S1_at--893--7831Chr01:1812673..1812697 (25 bp)
GGTAAAGCCACAATCATATATCAAC
LOC_Os01g04130
OsAffx.1926.1.S1_at--67--4411Chr01:1812667..1812691 (25 bp)
GCCACAATCATATATCAACTACAGT
LOC_Os01g04130
OsAffx.1926.1.S1_at--387--7491NONE
GTGGGGAGGCACTTGTGAATAATAA
NONE
Target Sequence 
CGCTGCTCGGAATAGGTTCGATTGGGGAAGTGCCTGTCTTGTTGGTAAAGCCACAATCATATATCAACTACAGTGGGGAG
GCACTTGTGAATAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis