Browse Element(s) Details


OsAffx.19369.1.S1_at

Description tigr:9639.m04114
TID=OsAffx.19369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4437011/11hypothetical protein
LOC_Os05g159501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44340OsAffx.19366.1.S1_at11/1111+26287630..26295603hypothetical protein
LOC_Os11g44350OsAffx.19367.1.S1_at11/1111+26299209..26304621expressed protein
LOC_Os11g44360OsAffx.19368.1.S1_at11/1111+26309474..26309851hypothetical protein
LOC_Os11g44370OsAffx.19369.1.S1_at11/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.30891.1.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370Os.55580.1.S1_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44370OsAffx.28610.2.S1_x_at1/1111+26315734..26318946hypothetical protein
LOC_Os11g44380OsAffx.27508.7.S1_s_at11/1111+26324582..26325963expressed protein
LOC_Os11g44390Os.49232.1.S1_x_at8/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44390OsAffx.18435.1.S1_x_at1/1111+26337706..26344950retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19369.1.S1_at--651--5174Chr12:6400851..6400870 (20 bp)
GCAAGATTCAACCTTTGAGCCCTCA
NONE
OsAffx.19369.1.S1_at--427--131Chr11:26318821..26318845 (25 bp)
ATTCAGCCTTCGGAAATCCCTTTCT
LOC_Os11g44370
OsAffx.19369.1.S1_at--798--5572Chr01:18683765..18683789 (25 bp)
GAAATCCCTTTCTAGTTCGAGGATG
NONE
OsAffx.19369.1.S1_at--1011--10431Chr11:26318771..26318795 (25 bp)
TTATGGAAACACCTCGGACTATTTG
LOC_Os11g44370
OsAffx.19369.1.S1_at--514--2431Chr11:26318742..26318766 (25 bp)
AAAAGAGACCACCTATCCCGAGTAG
LOC_Os11g44370
OsAffx.19369.1.S1_at--936--10051Chr11:26318720..26318744 (25 bp)
TAGTCCCTCTAATCCGCTCGAGGAA
LOC_Os11g44370
OsAffx.19369.1.S1_at--391--8511Chr11:26316795..26316816 (22 bp)
TGGCACGCCGTTAGCACTCGAGTCT
LOC_Os11g44370
OsAffx.19369.1.S1_at--193--1991Chr11:26315842..26315861 (20 bp)
ACTCGAGTCTCCAATGACGGTTGTA
LOC_Os11g44370
OsAffx.19369.1.S1_at--549--10792Chr11:26315822..26315846 (25 bp)
TTGTAGAGGTCGGTGCACCCATAAC
LOC_Os11g44370
OsAffx.19369.1.S1_at--632--9791Chr11:26315801..26315825 (25 bp)
TAACCGCTATCAGGGACCAACCAGG
LOC_Os11g44370
OsAffx.19369.1.S1_at--318--1711Chr11:26315786..26315810 (25 bp)
ACCAACCAGGAGCTGCCACGTGGAA
LOC_Os11g44370
Target Sequence 
GCAAGATTCAACCTTTGAGCCCTCACCCGAACCTCGGGAATTGGAGGAAGAAGAAATTCAGCCTTCGGAAATCCCTTTCT
AGTTCGAGGATGATCTTTTTGAAGATTATGGAAACACCTCGGACTATTTGTGTCAAAAGAGACCACCTATCCCGAGTAGT
CCCTCTAATCCGCTCGAGGAAAGTTTCCTCAAAGAGACGGATCAAATCAGCTGGCACGCCGTTAGCACTCGAGTCTCCAA
TGACGGTTGTAGAGGTCGGTGCACCCATAACCGCTATCAGGGACCAACCAGGAGCTGCCACGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis