Browse Element(s) Details


OsAffx.19505.1.S1_at

Description tigr:9640.m00459
TID=OsAffx.19505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=g10 protein homolog. (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g054107/11G10 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed
LOC_Os12g05430Os.9317.2.S1_at11/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.45407.1.S1_s_at3/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.26422.1.S1_x_at1/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05440Os.51923.1.S1_at11/1112+2466931..2468702Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19505.1.S1_at--203--8211NONE
GGAAGGAGCTCTAAGATTTCTGATT
NONE
OsAffx.19505.1.S1_at--100--8091NONE
GGAGCTCTAAGATTTCTGATTGTAT
NONE
OsAffx.19505.1.S1_at--794--4811NONE
GCTCTAAGATTTCTGATTGTATCAC
NONE
OsAffx.19505.1.S1_at--938--3731NONE
CTAAGATTTCTGATTGTATCACCAT
NONE
OsAffx.19505.1.S1_at--683--6531Chr12:2449210..2449234 (25 bp)
GATTTCTGATTGTATCACCATATGC
LOC_Os12g05410
OsAffx.19505.1.S1_at--340--8831Chr12:2449216..2449240 (25 bp)
TGATTGTATCACCATATGCAGCCAG
LOC_Os12g05410
OsAffx.19505.1.S1_at--150--6611Chr12:2449217..2449241 (25 bp)
GATTGTATCACCATATGCAGCCAGA
LOC_Os12g05410
OsAffx.19505.1.S1_at--416--51Chr12:2449218..2449242 (25 bp)
ATTGTATCACCATATGCAGCCAGAA
LOC_Os12g05410
OsAffx.19505.1.S1_at--1008--10771Chr12:2449219..2449243 (25 bp)
TTGTATCACCATATGCAGCCAGAAG
LOC_Os12g05410
OsAffx.19505.1.S1_at--878--6891Chr12:2449221..2449245 (25 bp)
GTATCACCATATGCAGCCAGAAGAA
LOC_Os12g05410
OsAffx.19505.1.S1_at--738--9671Chr12:2449224..2449248 (25 bp)
TCACCATATGCAGCCAGAAGAAGCA
LOC_Os12g05410
Target Sequence 
GGAAGGAGCTCTAAGATTTCTGATTGTATCACCATATGCAGCCAGAAGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis