Browse Element(s) Details


OsAffx.19570.1.S1_at

Description tigr:9640.m00862
TID=OsAffx.19570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0924011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09220Os.55701.1.S1_at11/1112+4813524..4817470expressed protein
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein
LOC_Os12g09240OsAffx.19570.1.S1_at11/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09240OsAffx.9949.1.S1_at1/1112+4835869..4840580NB-ARC domain containing protein
LOC_Os12g09250OsAffx.19571.1.S1_at11/1112+4847895..4849466expressed protein
LOC_Os12g09260Os.45957.4.S1_x_at1/1112+4850629..4854804retrotransposon protein, putative, unclassified
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19570.1.S1_at--880--6331Chr12:4836503..4836527 (25 bp)
GATGCATTGTGCTCTTCTCTTGAAA
LOC_Os12g09240
OsAffx.19570.1.S1_at--448--8971Chr12:4836483..4836507 (25 bp)
TGAAAGTCTATCTCGTTCTTCCAGC
LOC_Os12g09240
OsAffx.19570.1.S1_at--487--971Chr12:4836452..4836476 (25 bp)
AGGAGCCTTGACCTGGACAGCCATT
LOC_Os12g09240
OsAffx.19570.1.S1_at--19--10231Chr12:4836426..4836450 (25 bp)
TATTCTAGTGTCATTCGATCGCTTG
LOC_Os12g09240
OsAffx.19570.1.S1_at--1084--5691Chr12:4836367..4836391 (25 bp)
GACTCAATCTGTATGGTTGCCGGCT
LOC_Os12g09240
OsAffx.19570.1.S1_at--671--7971Chr12:4836337..4836361 (25 bp)
GGATCCCCAGATGGATTTCTCAGCT
LOC_Os12g09240
OsAffx.19570.1.S1_at--654--4831Chr12:4836318..4836339 (22 bp)
GCTACATAACCTCTACAGCTTGTTG
LOC_Os12g09240
OsAffx.19570.1.S1_at--217--5111Chr12:4836149..4836173 (25 bp)
GCACGGCATTTCGAGCTCTTAGGGA
LOC_Os12g09240
OsAffx.19570.1.S1_at--538--9551Chr12:4836133..4836157 (25 bp)
TCTTAGGGACCTTACATTCAGCTGC
LOC_Os12g09240
OsAffx.19570.1.S1_at--652--1311Chr12:4836062..4836086 (25 bp)
AGAGGCTCGACCTACGGTTTTATGT
LOC_Os12g09240
OsAffx.19570.1.S1_at--64--2071Chr12:4836012..4836036 (25 bp)
ACTTGCCTACCTGTTGGGATCGAGA
LOC_Os12g09240
Target Sequence 
GATGCATTGTGCTCTTCTCTTGAAAGTCTATCTCGTTCTTCCAGCTGCCTCAGGAGCCTTGACCTGGACAGCCATTTTAT
TCTAGTGTCATTCGATCGCTTGAGCGACTTGTGCCCTTCACCCCGCCATCTTCGCAGACTCAATCTGTATGGTTGCCGGC
TACCCAGGATCCCCAGATGGATTTCTCAGCTACATAACCTCTACAGCTTGTTGCCCTCCCTTGTCCAACTTGACCTTGGT
ATTCGAGAATGTCCAAAAGAGAGGATCGTCGTCTCTGGCGCCGGCACGGCATTTCGAGCTCTTAGGGACCTTACATTCAG
CTGCCCTAAGCCTCGCCTGGCCTTTCTAGTGGGGGCCATGCCGAGGCTCCAGAGGCTCGACCTACGGTTTTATGTGAATG
GTTGGGAGCAACAAGGTGGCACTTGCCTACCTGTTGGGATCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis