Browse Element(s) Details


OsAffx.19826.2.S1_at

Description tigr:9633.m03603
TID=OsAffx.19826.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3878011/11hypothetical protein
LOC_Os02g444205/11hypothetical protein
LOC_Os05g419805/11Papain family cysteine protease containing protein
LOC_Os09g338404/11hypothetical protein
LOC_Os12g018501/11pentatricopeptide, putative, expressed
LOC_Os12g256801/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38820Os.27839.1.S1_at10/115+22686909..22690898CCAAT-binding transcription factor subunit HAP3B, putative, expressed
LOC_Os05g38830Os.51950.1.S1_at11/115+22692887..22695920HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19826.2.S1_at--754--7293Chr05:22668628..22669039 (25 bp)
GTGCGAGCGCGGTTCTTGCTGGGCG
LOC_Os05g38780
OsAffx.19826.2.S1_at--497--9874Chr05:24496129..24496153 (25 bp)
TACATGAGCTGTTCGAGTTCATCGT
LOC_Os05g41980
OsAffx.19826.2.S1_at--382--2114Chr05:24496130..24496154 (25 bp)
ACATGAGCTGTTCGAGTTCATCGTC
LOC_Os05g41980
OsAffx.19826.2.S1_at--1129--3514Chr05:24496131..24496155 (25 bp)
CATGAGCTGTTCGAGTTCATCGTCG
LOC_Os05g41980
OsAffx.19826.2.S1_at--681--695Chr05:24496132..24496156 (25 bp)
ATGAGCTGTTCGAGTTCATCGTCGG
LOC_Os05g41980
OsAffx.19826.2.S1_at--50--1955Chr12:14881363..14881387 (25 bp)
ACGGCCTCACCAGTCACCACGGAGG
LOC_Os12g25680
OsAffx.19826.2.S1_at--848--4611Chr05:22669208..22669232 (25 bp)
GCGAGCTAGCCGTACCACACCGTGA
LOC_Os05g38780
OsAffx.19826.2.S1_at--32--5911Chr05:22669210..22669234 (25 bp)
GAGCTAGCCGTACCACACCGTGAAC
LOC_Os05g38780
OsAffx.19826.2.S1_at--83--1571Chr05:22669211..22669235 (25 bp)
AGCTAGCCGTACCACACCGTGAACG
LOC_Os05g38780
OsAffx.19826.2.S1_at--134--4671Chr05:22669212..22669236 (25 bp)
GCTAGCCGTACCACACCGTGAACGG
LOC_Os05g38780
OsAffx.19826.2.S1_at--410--9971Chr05:22669214..22669238 (25 bp)
TAGCCGTACCACACCGTGAACGGCG
LOC_Os05g38780
Target Sequence 
GTGCGAGCGCGGTTCTTGCTGGGCGTTCTCTGCCGTGGCGGCGATAGAGGGGATCAACAAGAACGGCGAGCTGGTGTCGC
TGTCGGAGCAGGAGCTCGTAGACTGCGACGACGAGGCCGTGGGGTGCGGCGGCGGGTACATGAGCTGTTCGAGTTCATCG
TCGGCAACCACGGCCTCACCAGTCACCACGGAGGCGAGCTAGCCGTACCACACCGTGAACGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19826.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis