Browse Element(s) Details


OsAffx.19900.1.S1_at

Description tigr:9640.m02948
TID=OsAffx.19900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g305009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19900.1.S1_at--395--4131Chr12:18280730..18280754 (25 bp)
CGCAGGTCGTGCTGCTCAAGGAGAT
LOC_Os12g30500
OsAffx.19900.1.S1_at--246--8331Chr12:18280920..18280944 (25 bp)
GGCTGCGAAGACGTCCTACATTGGT
LOC_Os12g30500
OsAffx.19900.1.S1_at--49--2771Chr12:18280927..18280951 (25 bp)
AAGACGTCCTACATTGGTGCTGTGG
LOC_Os12g30500
OsAffx.19900.1.S1_at--20--7791NONE
GGTGCTGTGGCCAAGTGGTTCACAT
NONE
OsAffx.19900.1.S1_at--751--3211NONE
CAAGTGGTTCACATCGATCGTTTCA
NONE
OsAffx.19900.1.S1_at--648--7891Chr12:18281664..18281688 (25 bp)
GGTTCACATCGATCGTTTCACGGTA
LOC_Os12g30500
OsAffx.19900.1.S1_at--925--2091Chr12:18281669..18281693 (25 bp)
ACATCGATCGTTTCACGGTATAAGA
LOC_Os12g30500
OsAffx.19900.1.S1_at--692--4871Chr12:18281686..18281710 (25 bp)
GTATAAGAAAACACCCCGCACCAAG
LOC_Os12g30500
OsAffx.19900.1.S1_at--267--1191Chr12:18281820..18281843 (24 bp)
AGTACCCAATTGGTCAGTGTGGCAA
LOC_Os12g30500
OsAffx.19900.1.S1_at--968--1091Chr12:18281834..18281858 (25 bp)
AGTGTGGCAACAACGTCGGCTTGCT
LOC_Os12g30500
OsAffx.19900.1.S1_at--96--9111Chr12:18281864..18281888 (25 bp)
TGCTCGACAAGGCTCCCAGGCCAGG
LOC_Os12g30500
Target Sequence 
CGCAGGTCGTGCTGCTCAAGGAGATCGCGCAGCAGCTCTGCAAGGAGGCCACGCCGCCGCTGCCGCCGTCTGCGGTGACC
GTCGGCCACCACCTCTACAAGGGCGCCGCCGCGCCGCCGGCCGTCACCGTCAAGATGCGGCCGCCGAGGCCGCCGGTGGT
GATGCACAGGAGGGTGATCGACGCGCCGCCGGCTGCGAAGACGTCCTACATTGGTGCTGTGGCCAAGTGGTTCACATCGA
TCGTTTCACGGTATAAGAAAACACCCCGCACCAAGTACCCAATTGGTCAGTGTGGCAACAACGTCGGCTTGCTGCTGCTG
CTCGACAAGGCTCCCAGGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis