Browse Element(s) Details


OsAffx.19903.1.S1_at

Description tigr:9640.m02955
TID=OsAffx.19903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY086480 ATMRK1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3057011/11ATMRK1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19903.1.S1_at--1074--1811Chr12:18333029..18333053 (25 bp)
ACGCCAACAATATCGTCCACCGCGA
LOC_Os12g30570
OsAffx.19903.1.S1_at--167--7091Chr12:18333055..18333079 (25 bp)
GTCAAGACGGAGAACATGCTCTTCC
LOC_Os12g30570
OsAffx.19903.1.S1_at--188--2771Chr12:18333058..18333082 (25 bp)
AAGACGGAGAACATGCTCTTCCTCG
LOC_Os12g30570
OsAffx.19903.1.S1_at--1142--1391Chr12:18333059..18333083 (25 bp)
AGACGGAGAACATGCTCTTCCTCGG
LOC_Os12g30570
OsAffx.19903.1.S1_at--461--1931Chr12:18333061..18333085 (25 bp)
ACGGAGAACATGCTCTTCCTCGGCG
LOC_Os12g30570
OsAffx.19903.1.S1_at--891--7511Chr12:18333133..18333157 (25 bp)
GTGGAGGCGCGCGACCCGAGGGAGA
LOC_Os12g30570
OsAffx.19903.1.S1_at--129--7651Chr12:18333152..18333176 (25 bp)
GGGAGATGACCGGCGCGACGGGCAC
LOC_Os12g30570
OsAffx.19903.1.S1_at--753--9111Chr12:18333274..18333298 (25 bp)
TGCGAGATGCCCTTCACGTTCGGGC
LOC_Os12g30570
OsAffx.19903.1.S1_at--414--6031Chr12:18333277..18333301 (25 bp)
GAGATGCCCTTCACGTTCGGGCTCA
LOC_Os12g30570
OsAffx.19903.1.S1_at--45--611Chr12:18333280..18333304 (25 bp)
ATGCCCTTCACGTTCGGGCTCAGCG
LOC_Os12g30570
OsAffx.19903.1.S1_at--688--9671Chr12:18333287..18333311 (25 bp)
TCACGTTCGGGCTCAGCGTCGCGGA
LOC_Os12g30570
Target Sequence 
ACGCCAACAATATCGTCCACCGCGACGTCAAGACGGAGAACATGCTCTTCCTCGGCGGCGGCGGCGGCGGCGACCTCAAG
ATCGCCGACTTCGGCGTGGCCCGCGTGGAGGCGCGCGACCCGAGGGAGATGACCGGCGCGACGGGCACGGTGGGGTACAT
GGCGCCGGAGGTGCTCGTCGGGAAGCCGTACAACCGCAAGTGCGACGTGTACAGCTTCGGCATCTGCCTGTGGGAGACGT
ACTGCTGCGAGATGCCCTTCACGTTCGGGCTCAGCGTCGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis