Browse Element(s) Details


OsAffx.19904.1.S1_at

Description tigr:9640.m02956
TID=OsAffx.19904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3058011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30550Os.53239.1.S1_at10/1112+18323024..18325115expressed protein
LOC_Os12g30560OsAffx.19902.1.S1_at11/1112+18328020..18328565hypothetical protein
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19904.1.S1_at--714--7711Chr12:18335842..18335921 (25 bp)
GGGTGTTCAAACACGTCCGTGGTCT
LOC_Os12g30580
OsAffx.19904.1.S1_at--499--9091Chr12:18335960..18335984 (25 bp)
TGCTAAGCGGGCTGCTCGCCTGCCA
LOC_Os12g30580
OsAffx.19904.1.S1_at--690--4831Chr12:18335997..18336021 (25 bp)
GCTCACCACGGTGGACGTGCTCTGG
LOC_Os12g30580
OsAffx.19904.1.S1_at--554--4571Chr12:18336025..18336049 (25 bp)
GCGCGGTTCACGGAAGCTGACATGC
LOC_Os12g30580
OsAffx.19904.1.S1_at--553--10671Chr12:18336068..18336092 (25 bp)
TTCCAAACCCACTAGCAACATTGCT
LOC_Os12g30580
OsAffx.19904.1.S1_at--970--8431Chr12:18336136..18336160 (25 bp)
GGCCATGGCTGCTATTCCTCTTCCT
LOC_Os12g30580
OsAffx.19904.1.S1_at--53--3711Chr12:18336248..18336272 (25 bp)
CTAGGTCCGGTCATCGCTCGAGAGG
LOC_Os12g30580
OsAffx.19904.1.S1_at--36--7231Chr12:18336282..18336306 (25 bp)
GTCGAAGGTGTTTCGCAACGCGGTT
LOC_Os12g30580
OsAffx.19904.1.S1_at--374--1051Chr12:18336287..18336311 (25 bp)
AGGTGTTTCGCAACGCGGTTGACGA
LOC_Os12g30580
OsAffx.19904.1.S1_at--435--8371Chr12:18336365..18336389 (25 bp)
GGCGTCAGCAGAGTCTATCTGGAGT
LOC_Os12g30580
OsAffx.19904.1.S1_at--384--1151Chr12:18336376..18336400 (25 bp)
AGTCTATCTGGAGTAGGTTGGCCGA
LOC_Os12g30580
Target Sequence 
GGGTGTTCAAACACGTCCGTGGTCTGCCACCGTGCCAGTCCACCGTCACCGTGGGGTTCGACGTGCTAAGCGGGCTGCTC
GCCTGCCAGCCAAACAGGCCGCTCACCACGGTGGACGTGCTCTGGTGCGCGCGGTTCACGGAAGCTGACATGCCGCCCAC
CCGTACCCCTATTCCAAACCCACTAGCAACATTGCTGGCCGGCCCTCCAACAGCCGCCTCCCACGCCGCTGCCATCGCCG
GCCATGGCTGCTATTCCTCTTCCTCGTCTTCACACCACCTCCACCCTCCCTTCCCTAGTCCGGCTCGCCACCACCACCCT
CCCCCGGTCTGGCTCACCACCGGTGTCCTCCCTAGGTCCGGTCATCGCTCGAGAGGGGGAGGGGCGTCGAAGGTGTTTCG
CAACGCGGTTGACGAGGAGGTGTGTCGGAGGTGTCTCGCGACATGGTTGGTGGCGGTTGGTGGGGAGGGGCGTCAGCAGA
GTCTATCTGGAGTAGGTTGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis