Browse Element(s) Details


OsAffx.19992.2.S1_at

Description tigr:9640.m03230
TID=OsAffx.19992.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3318011/11expressed protein
LOC_Os12g367409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19992.2.S1_at--886--5132Chr12:22475866..22476269 (25 bp)
GCAAACATAAAGAGCTCTACACAGA
LOC_Os12g36740
OsAffx.19992.2.S1_at--799--2392Chr12:22475868..22476271 (25 bp)
AAACATAAAGAGCTCTACACAGAAG
LOC_Os12g36740
OsAffx.19992.2.S1_at--296--2512Chr12:22475869..22476272 (25 bp)
AACATAAAGAGCTCTACACAGAAGA
LOC_Os12g36740
OsAffx.19992.2.S1_at--282--3572Chr12:22475871..22476274 (25 bp)
CATAAAGAGCTCTACACAGAAGAAA
LOC_Os12g36740
OsAffx.19992.2.S1_at--117--5372Chr12:20049838..20049862 (25 bp)
GAAGAAAATAGTGAACGTACTAGTG
LOC_Os12g33180
OsAffx.19992.2.S1_at--397--4251Chr12:20049866..20049972 (25 bp)
CCGTGCAGCTCTCCAAGTTTCTTGG
LOC_Os12g33180
OsAffx.19992.2.S1_at--22--4011Chr12:20049867..20049973 (25 bp)
CGTGCAGCTCTCCAAGTTTCTTGGA
LOC_Os12g33180
OsAffx.19992.2.S1_at--822--7332Chr12:22476299..22476405 (25 bp)
GTGCAGCTCTCCAAGTTTCTTGGAC
LOC_Os12g36740
OsAffx.19992.2.S1_at--926--9032Chr12:22476300..22476406 (25 bp)
TGCAGCTCTCCAAGTTTCTTGGACG
LOC_Os12g36740
OsAffx.19992.2.S1_at--27--5072Chr12:22476301..22476407 (25 bp)
GCAGCTCTCCAAGTTTCTTGGACGT
LOC_Os12g36740
OsAffx.19992.2.S1_at--350--3392Chr12:22476302..22476408 (25 bp)
CAGCTCTCCAAGTTTCTTGGACGTG
LOC_Os12g36740
Target Sequence 
GCAAACATAAAGAGCTCTACACAGAAGAAAATAGTGAACGTACTAGTGGCCCCGTGCAGCTCTCCAAGTTTCTTGGACGT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19992.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis