Browse Element(s) Details


OsAffx.2016.1.S1_at

Description tigr:9629.m01571
TID=OsAffx.2016.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1580011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2016.1.S1_at--709--9611Chr01:8898028..8898052 (25 bp)
TCATCGACCATCTCTGCGCGCTCAG
LOC_Os01g15800
OsAffx.2016.1.S1_at--768--2393Chr01:8898060..8898084 (25 bp)
AAACTCATCCTGTTCCTTGTCCTCT
LOC_Os01g15800
OsAffx.2016.1.S1_at--741--2691Chr01:8898235..8898259 (25 bp)
AAGCTCGGCGGCAAGTGCGTGCTCA
LOC_Os01g15800
OsAffx.2016.1.S1_at--62--3791Chr01:8898238..8898262 (25 bp)
CTCGGCGGCAAGTGCGTGCTCAAGA
LOC_Os01g15800
OsAffx.2016.1.S1_at--58--2871Chr01:8898247..8898271 (25 bp)
AAGTGCGTGCTCAAGAGCGCCTGCA
LOC_Os01g15800
OsAffx.2016.1.S1_at--62--9151Chr01:8898250..8898274 (25 bp)
TGCGTGCTCAAGAGCGCCTGCAAGA
LOC_Os01g15800
OsAffx.2016.1.S1_at--227--9731Chr01:8898257..8898281 (25 bp)
TCAAGAGCGCCTGCAAGACGGCCAT
LOC_Os01g15800
OsAffx.2016.1.S1_at--569--2771Chr01:8898259..8898283 (25 bp)
AAGAGCGCCTGCAAGACGGCCATGG
LOC_Os01g15800
OsAffx.2016.1.S1_at--294--4571Chr01:8898340..8898364 (25 bp)
GCGCTGCGGAGCACCAGGCGCGTGC
LOC_Os01g15800
OsAffx.2016.1.S1_at--1004--7671Chr01:8898445..8898469 (25 bp)
GGGTTCGGCTGGAGCTCCAATGAGG
LOC_Os01g15800
OsAffx.2016.1.S1_at--392--3931Chr01:8898614..8898638 (25 bp)
CGGCGAGCTTCAAGGAGAAGGCGGT
LOC_Os01g15800
Target Sequence 
TCATCGACCATCTCTGCGCGCTCAGCCTCGGCAAACTCATCCTGTTCCTTGTCCTCTCCTACCTCATGCTGCTGGTGATG
TGGAAGCTCGGCGGCAAGTGCGTGCTCAAGAGCGCCTGCAAGACGGCCATGGCGGCGTGCTCCTGCTGCTGCCACGCCAT
GGCGGCCGCGCCGTGCTACCTCTGGCGCGCGCTGCGGAGCACCAGGCGCGTGCGCCGCGGGCGCCGCCGCCGCCGCGACG
ACGACGTGGAGGAAGGAAGAGGAGGAGGAGGAGGATGGGGCGGCTCGTCGTCGGGGTTCGGCTGGAGCTCCAATGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGGCTCCTCCTCCACCGGAGGCGGGGAGTACGGTGGCGGCCGCCGGCGCCACGG
GAGGAGTGGCGGCGGCGGCGCGAGGAAGCAAGAGCGGATGCGGCGGTCTCTGCGGCTGAGGCCGGCGAGCTTCAAGGAGA
AGGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis