Browse Element(s) Details


OsAffx.20311.1.S1_x_at

Description tigr:9638.m02546
TID=OsAffx.20311.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2975011/11BTB/POZ domain containing protein
LOC_Os10g2984011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA
LOC_Os10g29790OsAffx.20312.4.S1_x_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.4.S1_at11/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.1.S1_x_at6/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29790OsAffx.20312.3.S1_x_at4/1110+15156785..15157972BTB/POZ domain containing protein
LOC_Os10g29800OsAffx.30595.1.S1_at10/1110+15162420..15164392expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20311.1.S1_x_at--192--6552Chr10:15177699..15177723 (25 bp)
GATTATGGTGATCTTCTATCAAGCA
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--1075--1392Chr10:15177760..15177784 (25 bp)
AGACATTTGCCGCACACAGGTTGGT
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--294--3312Chr10:15177772..15177796 (25 bp)
CACACAGGTTGGTGCTAGCGGCACG
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--458--872Chr10:15177839..15177863 (25 bp)
AGGCACCACGGATGTCATAAAAATT
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--660--2352Chr10:15177888..15177912 (25 bp)
AAAGCTCTGCTTGTTTTTATCTACA
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--967--6792Chr10:15177900..15177924 (25 bp)
GTTTTTATCTACACGGACACTTGGC
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--81--6672Chr10:15177966..15177990 (25 bp)
GTTGCAGCCAATAAGTATAGCCTAT
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--502--8692Chr10:15178021..15178045 (25 bp)
TGTGCAGCTATATTGATACAAGTTC
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--842--8852Chr10:15178060..15178084 (25 bp)
TGATGCTAGCAGACAAGTACCAATG
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--533--2892Chr10:15178098..15178122 (25 bp)
AAGGTGTGCTTCAATTTCCTTGCCT
LOC_Os10g29840
OsAffx.20311.1.S1_x_at--319--7932Chr10:15178199..15178223 (25 bp)
GGATTTAATTTACAACATCGTTACT
LOC_Os10g29840
Target Sequence 
GATTATGGTGATCTTCTATCAAGCAAAGAGGGNACCGATNTCGAGTTTGTGGTTNGCGGCGAGACATTTGCCGCACACAG
GTTGGTGCTAGCGGCACGGTCGCNGGTGTTCAAGGCGGAGCTATTCANACCAATGGAGGNAGGCACCACGGATGTCATAA
AAATTGANAACATGGATGCACAAGTGTTTAAAGCTCTGCTTGTTTTTATCTACACGGACACTTGGCCAGAGATAGNTCAA
GANGAGACGACTATGGTTCAACNNNTACTCGTTGCAGCCAATAAGTATAGCCTATCAAGACTGAAGATAATGTGCGAAGA
TANGTTGTGCAGCTATATTGATACAAGTTCAGTGGTTACNATGCTGATGCTAGCAGACAAGTACCAATGCCATGGTCTNA
AGAAGGTGTGCTTCAATTTCCTTGCCTCTTCNAGAGCATTGTCTTTGGNCATGAAAGCAGATAATTTCNGGTGTTTAATC
CAGNGCNNTCCNACTATGTTGAAGGATTTAATTTACAACATCGTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20311.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis