Browse Element(s) Details


OsAffx.20327.1.S1_at

Description tigr:9638.m02478
TID=OsAffx.20327.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2910011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29060OsAffx.20328.1.S1_x_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29060OsAffx.20328.1.S1_at11/1110+14812322..14813638hypothetical protein
LOC_Os10g29070OsAffx.30515.1.S1_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.1.S1_x_at11/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.4.S1_x_at6/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.2.S1_x_at3/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_x_at2/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29070OsAffx.30515.5.S1_at1/1110+14814315..14816645hAT family dimerisation domain containing protein
LOC_Os10g29090NANA10+14821852..14826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein
LOC_Os10g29110Os.46820.1.S1_at10/1110+14839923..14841488BTB/POZ domain containing protein, expressed
LOC_Os10g29120OsAffx.30584.2.S1_at10/1110+14842175..14843661BTB/POZ domain containing protein
LOC_Os10g29130OsAffx.30582.1.S1_s_at10/1110+14847117..14847476hypothetical protein
LOC_Os10g29150OsAffx.8109.1.S1_at11/1110+14853400..14854572BTB/POZ domain containing protein, expressed
LOC_Os10g29159OsAffx.10196.1.S1_x_at1/1110+14857358..14857600hypothetical protein
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20327.1.S1_at--819--1031Chr10:14837869..14837893 (25 bp)
AGGTCGCCGGCCAGAGGTTCACAGC
LOC_Os10g29100
OsAffx.20327.1.S1_at--173--2611Chr10:14837807..14837831 (25 bp)
AACGCGGAGCTCTTTGGCATGATGA
LOC_Os10g29100
OsAffx.20327.1.S1_at--35--1711Chr10:14837765..14837789 (25 bp)
ACCAACGATGCCATCCAAATCGGTG
LOC_Os10g29100
OsAffx.20327.1.S1_at--26--591Chr10:14837753..14837777 (25 bp)
ATCCAAATCGGTGACATGGCGGCGC
LOC_Os10g29100
OsAffx.20327.1.S1_at--703--7651Chr10:14837665..14837689 (25 bp)
GGGAGGACACCATGTGCGAGCATCT
LOC_Os10g29100
OsAffx.20327.1.S1_at--918--1171Chr10:14837575..14837599 (25 bp)
AGTACATTGGCATAGGCACGGTGAT
LOC_Os10g29100
OsAffx.20327.1.S1_at--737--931Chr10:14837562..14837586 (25 bp)
AGGCACGGTGATGGACATCCTCGCG
LOC_Os10g29100
OsAffx.20327.1.S1_at--128--8491Chr10:14837536..14837560 (25 bp)
TGGCTGATCAACACCACTGCAAGGG
LOC_Os10g29100
OsAffx.20327.1.S1_at--322--10611Chr10:14837495..14837519 (25 bp)
TTCGATTTTCTCAGGTCGCCGGCGA
LOC_Os10g29100
OsAffx.20327.1.S1_at--729--8251Chr10:14837453..14837477 (25 bp)
GGCAGCGAAAGCTTCGAGCATCTGA
LOC_Os10g29100
OsAffx.20327.1.S1_at--882--5891Chr10:14837424..14837448 (25 bp)
GAGCTTCCCCTCTCTTATGAAGGAG
LOC_Os10g29100
Target Sequence 
AGGTCGCCGGCCAGAGGTTCACAGCGCACCGGTGCGTGCTCGCGGCACGGTCACCGGTCTTCAACGCGGAGCTCTTTGGC
ATGATGATGGAGAGCGACACCACCACCAACGATGCCATCCAAATCGGTGACATGGCGGCGCCGGTGTTCAAGGCGTTGCT
CCACTTCGTGTACACCGACTCGTTGCCGGAGACGATGGAGGAGAGGGAGGACACCATGTGCGAGCATCTGCTCGTCGCGG
CGGATCGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGGAAAGATTGTGCAAGTACATTGGCATAGGCACGGTGATG
GACATCCTCGCGCTGGCTGATCAACACCACTGCAAGGGGCTGAAGAAGGCGTGCTTCGATTTTCTCAGGTCGCCGGCGAA
CCTGAGTGCCGTCACCGGCAGCGAAAGCTTCGAGCATCTGAGCAGGAGCTTCCCCTCTCTTATGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis