Browse Element(s) Details


OsAffx.20335.1.S1_at

Description gb:NM_196547.1
DB_XREF= gi:37534453
TID=OsAffx.20335.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2862011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28660Os.46678.1.S1_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28660Os.46678.2.S1_x_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20335.1.S1_at--1139--3771Chr10:14590708..14590732 (25 bp)
CTCGGCGTGAGGAGCATGCAACCAC
LOC_Os10g28620
OsAffx.20335.1.S1_at--891--7371Chr10:14590714..14590738 (25 bp)
GTGAGGAGCATGCAACCACGGCAAC
LOC_Os10g28620
OsAffx.20335.1.S1_at--936--6171Chr10:14590716..14590740 (25 bp)
GAGGAGCATGCAACCACGGCAACGA
LOC_Os10g28620
OsAffx.20335.1.S1_at--107--3351Chr10:14590730..14590754 (25 bp)
CACGGCAACGACACCGCATAGGAAG
LOC_Os10g28620
OsAffx.20335.1.S1_at--291--3251Chr10:14590735..14590759 (25 bp)
CAACGACACCGCATAGGAAGGAAGC
LOC_Os10g28620
OsAffx.20335.1.S1_at--399--1531Chr10:14590816..14590840 (25 bp)
AGCAGGAGGTGATGGCTCAGCTAAG
LOC_Os10g28620
OsAffx.20335.1.S1_at--130--8491Chr10:14590828..14590852 (25 bp)
TGGCTCAGCTAAGCGGCGAGGGTTC
LOC_Os10g28620
OsAffx.20335.1.S1_at--163--8551Chr10:14590857..14590881 (25 bp)
TGGAGAGGAAGCGATAGCGACATCT
LOC_Os10g28620
OsAffx.20335.1.S1_at--532--6191Chr10:14590861..14590885 (25 bp)
GAGGAAGCGATAGCGACATCTCGGC
LOC_Os10g28620
OsAffx.20335.1.S1_at--165--451Chr10:14590878..14590902 (25 bp)
ATCTCGGCCGCCAAGCGGAGGGAAG
LOC_Os10g28620
OsAffx.20335.1.S1_at--443--1351Chr10:14590904..14590928 (25 bp)
AGACGACGAAAATGGCGGCTCAGTG
LOC_Os10g28620
Target Sequence 
CTCGGCGTGAGGAGCATGCAACCACGGCAACGACACCGCATAGGAAGGAAGCGAGGGCGGCGATGGCTCCACGCGGGGAG
GAAGCGAGCGCGGCGGGGGCTTGGTACGAGCAGGAGGTGATGGCTCAGCTAAGCGGCGAGGGTTCAATATGGAGAGGAAG
CGATAGCGACATCTCGGCCGCCAAGCGGAGGGAAGGAGACGACGAAAATGGCGGCTCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis