Browse Element(s) Details


OsAffx.20617.1.A1_x_at

Description gb:NM_195396.1
DB_XREF= gi:37532151
TID=OsAffx.20617.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0056A15.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g041301/11Lung seven transmembrane receptor family protein, expressed
LOC_Os06g442701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006005biological_processL-fucose biosynthesis
GO:0009225biological_processnucleotide-sugar metabolism
GO:0042350biological_processGDP-L-fucose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0050577molecular_functionGDP-L-fucose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20617.1.A1_x_at--521--9451Chr10:6710347..6710371 (25 bp)
TCGGCTTCATCAACGTGGTCATCCT
NONE
OsAffx.20617.1.A1_x_at--958--8291Chr10:6710349..6710373 (25 bp)
GGCTTCATCAACGTGGTCATCCTCA
NONE
OsAffx.20617.1.A1_x_at--107--9611Chr10:6710353..6710377 (25 bp)
TCATCAACGTGGTCATCCTCACTCA
NONE
OsAffx.20617.1.A1_x_at--956--371Chr10:6710355..6710379 (25 bp)
ATCAACGTGGTCATCCTCACTCACG
NONE
OsAffx.20617.1.A1_x_at--548--8591Chr10:6710362..6710386 (25 bp)
TGGTCATCCTCACTCACGCCGAGCT
NONE
OsAffx.20617.1.A1_x_at--600--1592Chr10:6710383..6710407 (25 bp)
AGCTCGACCTCTCCCAGCAGGCCGA
NONE
OsAffx.20617.1.A1_x_at--740--4951Chr10:6710399..6710423 (25 bp)
GCAGGCCGACGTCAAGTCCTTCTTC
NONE
OsAffx.20617.1.A1_x_at--1089--9711Chr10:6710410..6710434 (25 bp)
TCAAGTCCTTCTTCCCCGTAGAGCT
NONE
OsAffx.20617.1.A1_x_at--180--4251Chr10:6710425..6710449 (25 bp)
CCGTAGAGCTCCCATGCTACGTCGT
NONE
OsAffx.20617.1.A1_x_at--454--6951Chr10:6710427..6710451 (25 bp)
GTAGAGCTCCCATGCTACGTCGTCC
NONE
OsAffx.20617.1.A1_x_at--48--2912Chr10:6710463..6710487 (25 bp)
AAGGTCGGCGGCATCCACGCCAACT
NONE
Target Sequence 
TCGGCTTCATCAACGTGGTCATCCTCACTCACGCCGAGCTCGACCTCTCCCAGCAGGCCGACGTCAAGTCCTTCTTCCCC
GTAGAGCTCCCATGCTACGTCGTCCTCACCACCGCCAAGGTCGGCGGCATCCACGCCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20617.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis