Browse Element(s) Details


OsAffx.20823.2.S1_x_at

Description gb:NM_194475.1
DB_XREF= gi:37530309
TID=OsAffx.20823.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1136E01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0109011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g035405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g285004/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g263292/11retrotransposon protein, putative, unclassified
LOC_Os08g241202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g310901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g485401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g148501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20823.2.S1_x_at--1003--3913Chr12:12285014..12285038 (25 bp)
ATCATGTTAGAACCCCAAGTTGACA
NONE
OsAffx.20823.2.S1_x_at--685--87713Chr08:14433430..14433454 (25 bp)
TGTTAGAACCCCAAGTTGACAAAGA
LOC_Os08g24120
OsAffx.20823.2.S1_x_at--58--24583Chr12:12285043..12285067 (25 bp)
AACAAGGTACAACAATAGCATGGCT
NONE
OsAffx.20823.2.S1_x_at--81--2919Chr12:12285046..12285070 (25 bp)
AAGGTACAACAATAGCATGGCTACG
NONE
OsAffx.20823.2.S1_x_at--572--3073Chr12:12285056..12285078 (23 bp)
AATAGCATGGCTACGACAATAGGGC
NONE
OsAffx.20823.2.S1_x_at--228--5013Chr12:12285060..12285477 (25 bp)
GCATGGCTACGACAATAGGGCTGAC
NONE
OsAffx.20823.2.S1_x_at--701--4852Chr10:69919..70336 (25 bp)
GCTACGACAATAGGGCTGACGTCAT
LOC_Os10g01090
OsAffx.20823.2.S1_x_at--320--56133Chr12:15020903..15021320 (25 bp)
GACAATAGGGCTGACGTCATCAAGG
NONE
OsAffx.20823.2.S1_x_at--923--59342Chr12:5176719..5176798 (25 bp)
GAGAGCGGTTCACCGTGGACCGGGA
NONE
OsAffx.20823.2.S1_x_at--38--46145Chr11:10938176..10938200 (25 bp)
GCGACGGCGCAAAAGCGACGCGAAA
NONE
OsAffx.20823.2.S1_x_at--152--2351Chr10:69623..69647 (25 bp)
AAAGCGACGCGAAAGCGGCATCAGT
LOC_Os10g01090
Target Sequence 
ATCATGTTAGAACCCCAAGTTGACAAAGAAACAAGGTACAACAATAGCATGGCTACGACAATAGGGCTGACGTCATCAAG
GCGGGGCGGCGCCGGCAAGCGGGGCCCACTGGTCAGCGGCTCAGGGGAGAGCGGTTCACCGTGGACCGGGACCACGCGGG
TGGTCCACCGCCGGTCCACGGGACCGACGGCCCAGATCGCCCTCGGGCCGATCGGACGGGCGGCGGTGGAGGCAGCCGCC
GGGCTCGGCTCGGCATCAAAGCCGACCGGCCGACCCGGGGCTAACGGCGGCGGCACGCGCGCGTCGCGTTGCCAGCGACG
GCATCCGGCGGCGGAGGCGACGGCGCAAAAGCGACGCGAAAGCGGCATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20823.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis