Browse Element(s) Details


OsAffx.2085.1.S1_at

Description tigr:9629.m02471
TID=OsAffx.2085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dimethylaniline monooxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2547011/11flavin-containing monooxygenase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2085.1.S1_at--117--5011Chr01:14427277..14427301 (25 bp)
GCATGGTGGTGTCGCTCGACCTGTG
LOC_Os01g25470
OsAffx.2085.1.S1_at--1118--42512Chr11:432261..432280 (20 bp)
CCGGCGATGTCAGAGGATGCCATTG
NONE
OsAffx.2085.1.S1_at--350--8117Chr11:432282..432458 (25 bp)
GGACGTCTTGCATATGTTAGAGGAC
NONE
OsAffx.2085.1.S1_at--870--7132Chr06:13611779..13611803 (25 bp)
GTCTTGCATATGTTAGAGGACGTCG
NONE
OsAffx.2085.1.S1_at--891--3311Chr01:14425252..14425276 (25 bp)
CACTTTGGTTGGTTCTTCTACGCCG
LOC_Os01g25470
OsAffx.2085.1.S1_at--409--8571Chr01:14425247..14425271 (25 bp)
TGGTTGGTTCTTCTACGCCGTGTAA
LOC_Os01g25470
OsAffx.2085.1.S1_at--22--10871Chr01:14425244..14425268 (25 bp)
TTGGTTCTTCTACGCCGTGTAACAG
LOC_Os01g25470
OsAffx.2085.1.S1_at--205--10571Chr01:14425240..14425264 (25 bp)
TTCTTCTACGCCGTGTAACAGTCAT
LOC_Os01g25470
OsAffx.2085.1.S1_at--710--10571Chr01:14425237..14425261 (25 bp)
TTCTACGCCGTGTAACAGTCATCAC
LOC_Os01g25470
OsAffx.2085.1.S1_at--505--9951Chr01:14425234..14425258 (25 bp)
TACGCCGTGTAACAGTCATCACAAT
LOC_Os01g25470
OsAffx.2085.1.S1_at--642--4491Chr01:14425231..14425255 (25 bp)
GCCGTGTAACAGTCATCACAATAGT
LOC_Os01g25470
Target Sequence 
GCATGGTGGTGTCGCTCGACCTGTGCGACCACAGCGCCCTCCCGGCGATGGTGGTGCGCGACGCCGTCCACGTCCTCCCT
GGCGAGGTGCTCGGCAAGTCCACGTTCGAGCTCGCCGTGTTGCTCATGGCGTGGCTCCCGCTCTGGCTCGTCGACAAGAT
CCTCGTCCTCCTCGCCTGGTTCGTCCTCGGCAACCTCGCCAAGCTCGGCATCCGCCGCCCCACCACTGGGCGGCTGGGGG
CGATGGGGCGACGGCTTGGAGGGGGGCGTGCAGCGCCGGCGATGTCAGAGGATGCCATTGGGGACGTCTTGCATATGTTA
GAGGACGTCGTTGGCGATGAAGCCACCACTTTGGTTGGTTCTTCTACGCCGTGTAACAGTCATCACAATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis