Browse Element(s) Details


OsAffx.20858.3.S1_x_at

Description gb:NM_189003.1
DB_XREF= gi:34905089
GEN=P0686C03.28
TID=OsAffx.20858.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.28 (P0686C03.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4047011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20858.3.S1_x_at--619--9971Chr08:25470420..25470444 (25 bp)
TACCTCTTCCAGATATGGCCAGTGG
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--47--7971Chr08:25470476..25470500 (25 bp)
GGAGGCAGTGGGTCCCCACTACCCT
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--585--3771Chr08:25470506..25470530 (25 bp)
CTCTCTCCCAGATTTGGTCGGAGGT
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--1117--911Chr08:25470532..25470556 (25 bp)
AGGCAGTCGGTGAGTAGCAGCAGCA
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--15--9991Chr08:25470771..25470795 (25 bp)
TAGCCAGTCCCCAGTCTGTCAAAAT
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--1133--7231Chr08:25470777..25470801 (25 bp)
GTCCCCAGTCTGTCAAAATTCGGTT
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--1104--7134Chr10:4702009..4702032 (24 bp)
GTCTGTCAAAATTCGGTTAGACCGA
NONE
OsAffx.20858.3.S1_x_at--96--10811Chr08:25470842..25470866 (25 bp)
TTGGGAAGAAATTCGGTCCTCATTT
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--1138--5353Chr12:1902161..1902482 (25 bp)
GAAGAAATTCGGTCCTCATTTTTCA
NONE
OsAffx.20858.3.S1_x_at--247--3891Chr08:25470855..25470879 (25 bp)
CGGTCCTCATTTTTCAAAGACTGAA
LOC_Os08g40470
OsAffx.20858.3.S1_x_at--414--9651Chr08:25470868..25470892 (25 bp)
TCAAAGACTGAAATAACCGAAAGAC
LOC_Os08g40470
Target Sequence 
TACCTCTTCCAGATATGGCCAGTGGGGAGGAGGCCGCTTGCAGCGGCAACAATGGAGGAGGCAGTGGGTCCCCACTACCC
TCCCCTCTCTCTCCCAGATTTGGTCGGAGGTAAGGCAGTCGGTGAGTAGCAGCAGCAGCTCGTCCACGGCGGCTTCAGCG
GCGCCTCCGCTGGTCCGTCCTCGACTTCCATCACGCCGGCGCTGCCTCCACCCTCTGCCTCCATCGCGCCGCCTCCGCCA
GTCCATCCTCAACCTCCATCGCGCCCGGGCCGTCTCCACCCTCCGCCTCCATCACGCTGCCTCCGCGAGCCTGCCTCTGC
CTCAACGCCGCCATCGCGCCGCCTCCATCTCTAGCCAGTCCCCAGTCTGTCAAAATTCGGTTAGACCGAGACCGAGACTG
AATTTGTCGGTCCTGAGTTTTTTTGGGAAGAAATTCGGTCCTCATTTTTCAAAGACTGAAATAACCGAAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20858.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis