Browse Element(s) Details


OsAffx.20858.4.S1_x_at

Description gb:NM_189005.1
DB_XREF= gi:34905093
GEN=P0686C03.30
TID=OsAffx.20858.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.30 (P0686C03.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4047011/11hypothetical protein
LOC_Os05g327509/11hypothetical protein
LOC_Os07g107609/11hypothetical protein
LOC_Os01g367008/11hypothetical protein
LOC_Os09g085007/11hypothetical protein
LOC_Os02g264904/11hypothetical protein
LOC_Os01g084903/11hypothetical protein
LOC_Os03g464303/11hypothetical protein
LOC_Os02g474803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40500Os.55699.1.S1_at10/118+25495911..25496794expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20858.4.S1_x_at--663--5053Chr08:25473504..25473528 (25 bp)
GCAGCAGTTCCCCACTATTGAGAGG
LOC_Os08g40470
OsAffx.20858.4.S1_x_at--217--6031Chr08:25473523..25473547 (25 bp)
GAGAGGACTACCGTGGCTAGATCAA
LOC_Os08g40470
OsAffx.20858.4.S1_x_at--111--2819Chr09:4437031..4437055 (25 bp)
AAGATACTTGTGTCGGCGTGGTTGC
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--1085--1171Chr08:25473616..25473640 (25 bp)
AGTTTGGATCCAGAGCTAGGCACAA
LOC_Os08g40470
OsAffx.20858.4.S1_x_at--877--1999Chr09:4437091..4437115 (25 bp)
ACTCGTGCTGCATATTGGACTAGAA
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--151--6099Chr09:4437138..4437162 (25 bp)
GAGTAAATCCACACCAGATCGCAGC
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--540--1296Chr09:4437153..4437177 (25 bp)
AGATCGCAGCCAGAATTCACTTATG
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--545--74Chr08:25473927..25473951 (25 bp)
ATTGCTCAGGCCATTGCTGTATTTA
LOC_Os08g40470
OsAffx.20858.4.S1_x_at--392--2815Chr09:4437406..4437430 (25 bp)
AAGATAAGCCCTTCCAATTCCTGCA
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--497--10675Chr09:4437423..4437447 (25 bp)
TTCCTGCACTGTTGGACTCTCTTGA
LOC_Os09g08500
OsAffx.20858.4.S1_x_at--13--8135Chr09:4437436..4437460 (25 bp)
GGACTCTCTTGAGGTCACAATCCAA
LOC_Os09g08500
Target Sequence 
GCAGCAGTTCCCCACTATTGAGAGGACTACCGTGGCTAGATCAAATCAAAAAAGATCGAAGAATTTTAGTGAACAAGAAG
ATAAGATACTTGTGTCGGCGTGGTTGCATGTAAGTTTGGATCCAGAGCTAGGCACAAATCAAACTCGTGCTGCATATTGG
ACTAGAATATACGAGCACTTATACAAAACGAGTAAATCCACACCAGATCGCAGCCAGAATTCACTTATGCATCGTTGGAA
AACTATACAAGAGAATGTCAACAAGTTTTGTGGATATCTGAGCCAGATTGAGGGTAGAAGACAAAGCGGGGTTAGTATAC
ACGACAAGATTGCTCAGGCCATTGCTGTATTTAAGGAGTTGGAAGATAAGCCCTTCCAATTCCTGCACTGTTGGACTCTC
TTGAGGTCACAATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20858.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis