Browse Element(s) Details


OsAffx.21147.1.S1_at

Description gb:NM_193775.1
DB_XREF= gi:34914633
GEN=OSJNBa0054L14.14
TID=OsAffx.21147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0054L14.14 (OSJNBa0054L14.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g183101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18280OsAffx.31543.1.S1_x_at11/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.1.S1_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_x_at10/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18280Os.29809.2.S1_at9/111+10259724..10264740SNF7 family protein, expressed
LOC_Os01g18290Os.27705.1.S1_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.1.S1_a_at11/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18290Os.27705.3.S1_at2/111+10267935..10271184Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18300OsAffx.22253.2.S1_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18300OsAffx.22253.2.S1_s_at11/111+10280313..10280699hypothetical protein
LOC_Os01g18310Os.57179.1.S1_at5/111+10285754..10286422hypothetical protein
LOC_Os01g18310OsAffx.21147.1.S1_at1/111+10285754..10286422hypothetical protein
LOC_Os01g18320Os.5439.1.S1_a_at11/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18320OsAffx.20253.1.S1_x_at2/111+10288674..10292237Protoporphyrinogen oxidase, chloroplast precursor, putative, expressed
LOC_Os01g18330OsAffx.23288.1.S1_at11/111+10294491..10294817hypothetical protein
LOC_Os01g18340NANA1+10300522..10300989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21147.1.S1_at--601--3911NONE
CTGGACGGAGTTCCCTAACACGTGG
NONE
OsAffx.21147.1.S1_at--280--5491Chr01:18382587..18382611 (25 bp)
GAACAAATCGGACCACTGGTTCACC
NONE
OsAffx.21147.1.S1_at--9--7251Chr01:18382561..18382585 (25 bp)
GTCCAACCGCCAGTTTATCGGTCTA
NONE
OsAffx.21147.1.S1_at--48--10351Chr01:18382548..18382572 (25 bp)
TTTATCGGTCTAACCGCCGGAGCAA
NONE
OsAffx.21147.1.S1_at--1001--2611Chr01:18382537..18382561 (25 bp)
AACCGCCGGAGCAATAATATATTTA
NONE
OsAffx.21147.1.S1_at--832--151Chr01:18382519..18382543 (25 bp)
ATATTTACTTCATGTTAGGCAAAAC
NONE
OsAffx.21147.1.S1_at--712--31Chr01:18382233..18382257 (25 bp)
AGGCTTCAGTTTGGTGGGCCCAACT
NONE
OsAffx.21147.1.S1_at--894--7631Chr01:18382221..18382245 (25 bp)
GGTGGGCCCAACTGCGAACGTGACA
NONE
OsAffx.21147.1.S1_at--1047--5451Chr01:18382206..18382230 (25 bp)
GAACGTGACACTGGATCCCATCTAG
NONE
OsAffx.21147.1.S1_at--344--6351Chr01:18382193..18382217 (25 bp)
GATCCCATCTAGTCGTAGACGTGGC
NONE
OsAffx.21147.1.S1_at--396--10032Chr01:18382178..18382202 (25 bp)
TAGACGTGGCAAGCTCAGGCCAGAT
NONE
Target Sequence 
CTGGACGGAGTTCCCTAACACGTGGTAAAGAAAAAGAACAAATCGGACCACTGGTTCACCCGTCCAACCGCCAGTTTATC
GGTCTAACCGCCGGAGCAATAATATATTTACTTCATGTTAGGCAAAACAGAACAAGTTGTGAAAGGCTTCAGTTTGGTGG
GCCCAACTGCGAACGTGACACTGGATCCCATCTAGTCGTAGACGTGGCAAGCTCAGGCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis