Browse Element(s) Details


OsAffx.2119.1.S1_at

Description tigr:9629.m02831
TID=OsAffx.2119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative Athila retroelement ORF1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2948811/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29507OsAffx.1196.1.S1_at2/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.15647.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.31752.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.1196.1.S1_x_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.17243.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507Os.10626.4.A1_s_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29530Os.52609.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.51104.2.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_x_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2119.1.S1_at--879--1511Chr01:16852060..16852084 (25 bp)
AGCTTGGGCCAGATTTACTTTATTA
LOC_Os01g29488
OsAffx.2119.1.S1_at--746--9931Chr01:16852093..16852117 (25 bp)
TACGCCTAACTTGTCTATACCCGAT
LOC_Os01g29488
OsAffx.2119.1.S1_at--57--6111Chr01:16852157..16852181 (25 bp)
GAGTCTGCATTCCATCTTAACATCA
LOC_Os01g29488
OsAffx.2119.1.S1_at--463--2091Chr01:16852176..16852200 (25 bp)
ACATCACTGCTGGAGAGTCGTTTTT
LOC_Os01g29488
OsAffx.2119.1.S1_at--864--9811Chr01:16852204..16852228 (25 bp)
TAACACCCCATCTGAAGGCACGGAA
LOC_Os01g29488
OsAffx.2119.1.S1_at--833--5591Chr01:16852267..16852291 (25 bp)
GAAATATTCTGAACCCCTCCAAAAG
LOC_Os01g29488
OsAffx.2119.1.S1_at--77--2311Chr01:16852288..16852312 (25 bp)
AAAGGCATCTGTGTCAAGTCGTGAG
LOC_Os01g29488
OsAffx.2119.1.S1_at--431--951Chr01:16852311..16852335 (25 bp)
AGGACCCATCTTTAGTCGAACCTGA
LOC_Os01g29488
OsAffx.2119.1.S1_at--1116--6091Chr01:16852334..16852358 (25 bp)
GAGTCTGACCTTTCCATATCTGTAG
LOC_Os01g29488
OsAffx.2119.1.S1_at--123--3151Chr01:16852363..16852387 (25 bp)
AATTAAAGAATCCTCTCCCAAGCCA
LOC_Os01g29488
OsAffx.2119.1.S1_at--881--3132Chr12:11322515..11322588 (24 bp)
AATTCGAACTCCAGGATGTGCTCCT
NONE
Target Sequence 
AGCTTGGGCCAGATTTACTTTATTAGTACAATCTACGCCTAACTTGTCTATACCCGATTATGTGTTGTTACAACATTTTC
ATACAGGCTTAGATAAGGAGTCTGCATTCCATCTTAACATCACTGCTGGAGAGTCGTTTTTTCATAACACCCCATCTGAA
GGCACGGAAATCCTAGATCGAATCTTGGAAAATACTTCCTTTGTTGAGAAATATTCTGAACCCCTCCAAAAGGCATCTGT
GTCAAGTCGTGAGGACCCATCTTTAGTCGAACCTGAGTCTGACCTTTCCATATCTGTAGATTCAATTAAAGAATCCTCTC
CCAAGCCATCAACACCGGAGAGCAAAGAAATTCGAACTCCAGGATGTGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis