Browse Element(s) Details


OsAffx.21375.2.S1_at

Description gb:NM_197712.1
DB_XREF= gi:37536783
TID=OsAffx.21375.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0010C11.12), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4084011/11retrotransposon protein, putative, LINE subclass
LOC_Os05g286601/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40820Os.46624.1.S1_at11/1110+21620006..21623342expressed protein
LOC_Os10g40830Os.46623.1.S1_at11/1110+21625716..21627134Matrixin family protein, expressed
LOC_Os10g40840OsAffx.21375.2.S1_x_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.21375.2.S1_at11/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23250.2.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40840OsAffx.23143.3.S1_x_at1/1110+21629723..21631960retrotransposon protein, putative, LINE subclass
LOC_Os10g40859OsAffx.30740.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20138.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40859OsAffx.20140.1.S1_at11/1110+21632714..21638513Matrixin family protein, expressed
LOC_Os10g40880OsAffx.30741.1.S1_at11/1110+21639238..21640814oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890OsAffx.7914.1.S1_at11/1110+21642155..21647340retrotransposon protein, putative, unclassified
LOC_Os10g40900OsAffx.20137.1.S1_at11/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900Os.13877.1.S1_at1/1110+21649422..21652233oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920OsAffx.6932.1.S1_at11/1110+21654252..21657630pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21375.2.S1_at--649--1392Chr10:21631369..21631393 (25 bp)
AGAAGCCTTGACGGGTGGAAAATGC
LOC_Os10g40840
OsAffx.21375.2.S1_at--751--5492Chr10:21631386..21631410 (25 bp)
GAAAATGCAAAATCAACTGGACCCG
LOC_Os10g40840
OsAffx.21375.2.S1_at--150--2293Chr10:21631388..21631412 (25 bp)
AAATGCAAAATCAACTGGACCCGAA
LOC_Os10g40840
OsAffx.21375.2.S1_at--151--652Chr10:21631390..21631414 (25 bp)
ATGCAAAATCAACTGGACCCGAACC
LOC_Os10g40840
OsAffx.21375.2.S1_at--436--5132Chr10:21631392..21631416 (25 bp)
GCAAAATCAACTGGACCCGAACCTG
LOC_Os10g40840
OsAffx.21375.2.S1_at--934--1731Chr10:21631412..21631436 (25 bp)
ACCTGCCTACCCACTGGTTTCGGAG
LOC_Os10g40840
OsAffx.21375.2.S1_at--990--9011Chr10:21631415..21631439 (25 bp)
TGCCTACCCACTGGTTTCGGAGGTC
LOC_Os10g40840
OsAffx.21375.2.S1_at--91--3711Chr10:21631418..21631442 (25 bp)
CTACCCACTGGTTTCGGAGGTCTAG
LOC_Os10g40840
OsAffx.21375.2.S1_at--394--9931Chr10:21631419..21631443 (25 bp)
TACCCACTGGTTTCGGAGGTCTAGG
LOC_Os10g40840
OsAffx.21375.2.S1_at--40--4371Chr10:21631422..21631446 (25 bp)
CCACTGGTTTCGGAGGTCTAGGAAT
LOC_Os10g40840
OsAffx.21375.2.S1_at--174--1511Chr10:21631423..21631447 (25 bp)
CACTGGTTTCGGAGGTCTAGGAATC
LOC_Os10g40840
Target Sequence 
AGAAGCCTTGACGGGTGGAAAATGCAAAATCAACTGGACCCGAACCTGCCTACCCACTGGTTTCGGAGGTCTAGGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21375.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis