Browse Element(s) Details


OsAffx.21389.2.S1_at

Description tigr:9629.m04019
TID=OsAffx.21389.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4197011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed
LOC_Os01g42000NANA1+24140040..24141457expressed protein
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21389.2.S1_at--5--771Chr01:24128354..24128409 (25 bp)
ATGTCATTCCAGCTGGCAACCGTCT
LOC_Os01g41970
OsAffx.21389.2.S1_at--912--1611Chr01:24128399..24128419 (21 bp)
AGCTGGCAACCGTCTTCTCAAATGG
LOC_Os01g41970
OsAffx.21389.2.S1_at--11--7151Chr01:24128406..24128430 (25 bp)
GTCTTCTCAAATGGCACCAACGGTT
LOC_Os01g41970
OsAffx.21389.2.S1_at--923--6611Chr01:24128428..24128452 (25 bp)
GTTGGTGCCATCTCCCGTGGGTAGA
LOC_Os01g41970
OsAffx.21389.2.S1_at--802--451Chr01:24128437..24128461 (25 bp)
ATCTCCCGTGGGTAGACATTGAGGC
LOC_Os01g41970
OsAffx.21389.2.S1_at--307--5911Chr01:24128464..24128488 (25 bp)
GAGCTTCGCCGGTTGCGCCGCACGA
LOC_Os01g41970
OsAffx.21389.2.S1_at--1140--4511Chr01:24128480..24128504 (25 bp)
GCCGCACGACGGTAACAAGCATTGG
LOC_Os01g41970
OsAffx.21389.2.S1_at--660--2211Chr01:24128494..24128518 (25 bp)
ACAAGCATTGGCTTAAGCCCGGGAT
LOC_Os01g41970
OsAffx.21389.2.S1_at--35--9811Chr01:24128507..24128531 (25 bp)
TAAGCCCGGGATGCAGGCCAATGGC
LOC_Os01g41970
OsAffx.21389.2.S1_at--1014--2951Chr01:24128526..24128550 (25 bp)
AATGGCCTCATTTTCTGGCCTTTCA
LOC_Os01g41970
OsAffx.21389.2.S1_at--279--8411Chr01:24128529..24128553 (25 bp)
GGCCTCATTTTCTGGCCTTTCAAGA
LOC_Os01g41970
Target Sequence 
ATGTCATTCCAGCTGGCAACCGTCTTCTCAAATGGCACCAACGGTTGGTGCCATCTCCCGTGGGTAGACATTGAGGCGAG
AGCTTCGCCGGTTGCGCCGCACGACGGTAACAAGCATTGGCTTAAGCCCGGGATGCAGGCCAATGGCCTCATTTTCTGGC
CTTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21389.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis