Browse Element(s) Details


OsAffx.21459.2.S1_s_at

Description tigr:9629.m04403
TID=OsAffx.21459.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TAFII55 protein conserved region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g460205/11TAFII55 protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21459.2.S1_s_at--291--4131Chr01:26489551..26489575 (25 bp)
CGCTGTGGACCACCGCAGATCAAAT
NONE
OsAffx.21459.2.S1_s_at--828--5031Chr01:26489565..26489589 (25 bp)
GCAGATCAAATCCTCGCGCCAACAA
NONE
OsAffx.21459.2.S1_s_at--854--3451Chr01:26489601..26489625 (25 bp)
CAGTGCAATCAATAGCCCTCAAGAA
NONE
OsAffx.21459.2.S1_s_at--1008--5431Chr01:26489623..26489647 (25 bp)
GAACCGAGAAGAATGGAGCGCCGAA
NONE
OsAffx.21459.2.S1_s_at--739--2771Chr01:26489646..26489670 (25 bp)
AAGAGGGAGATCGACCCCATCTTCT
NONE
OsAffx.21459.2.S1_s_at--912--8271Chr01:26489686..26489710 (25 bp)
GGCATCAATTTTCGATTCCCGCTGC
NONE
OsAffx.21459.2.S1_s_at--484--8971Chr01:26491884..26491908 (25 bp)
TGAAAGCTTTCCAGCATCTCTCTTA
LOC_Os01g46020
OsAffx.21459.2.S1_s_at--625--9511Chr01:26491902..26491926 (25 bp)
TCTCTTAGATCTCCCAACTGTTATG
LOC_Os01g46020
OsAffx.21459.2.S1_s_at--866--2271Chr01:26492177..26492201 (25 bp)
AAATGTATTCAATGCCTTCCCTTTA
LOC_Os01g46020
OsAffx.21459.2.S1_s_at--163--1591Chr01:26492201..26492225 (25 bp)
AGCTCCTCATGGAAGCACTTTGTCA
LOC_Os01g46020
OsAffx.21459.2.S1_s_at--154--1971Chr01:26492232..26492256 (25 bp)
ACTGTTATTGTTCCATTCACTCATG
LOC_Os01g46020
Target Sequence 
CGCTGTGGACCACCGCAGATCAAATCCTCGCGCCAACAACCTCTCCTCATCAGTGCAATCAATAGCCCTCAAGAACCGAG
AAGAATGGAGCGCCGAAGAGGGAGATCGACCCCATCTTCTTCAACTCCGGCCGCCGGCATCAATTTTCGATTCCCGCTGC
TTCGAGGATGGAAGAAGTGGCACATTTATGATTGGAAATGAAAGCTTTCCAGCATCTCTCTTAGATCTCCCAACTGTTAT
GGAGTCATACAAGACATACAATGATTCAGTGCTAATTAAAACAGCTGATATTGGTCAGATGATTATGGTAAGAGAAGAAG
ATGATCCTGCTCCAGAAGGAATTGAATACACACATGGTCTTACTCCTCCAATGAGGGATGCACGAAGGCGGCGTTTCCGG
AGAGAGCCTGACTTAAATGTATTCAATGCCTTCCCTTTAGCTCCTCATGGAAGCACTTTGTCAATCATAACTGTTATTGT
TCCATTCACTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21459.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis