Browse Element(s) Details


OsAffx.21602.1.S1_at

Description gb:NM_191377.1
DB_XREF= gi:34909837
GEN=P0403C05.27
TID=OsAffx.21602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0403C05.27 (P0403C05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g560508/11MATE efflux family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21602.1.S1_at--920--10131Chr01:32598123..32598143 (21 bp)
TATGCTGTGGTTCGTAGCATTCTTG
LOC_Os01g56050
OsAffx.21602.1.S1_at--36--3891Chr01:32598039..32598139 (25 bp)
CTGTGGTTCGTAGCATTCTTGGAGA
LOC_Os01g56050
OsAffx.21602.1.S1_at--31--7911Chr01:32598035..32598135 (25 bp)
GGTTCGTAGCATTCTTGGAGATGTG
LOC_Os01g56050
OsAffx.21602.1.S1_at--1004--9591Chr01:32597176..32597341 (25 bp)
TCATCGGTTGCCTTCATGTGGTAAC
LOC_Os01g56050
OsAffx.21602.1.S1_at--4--6691Chr01:32597170..32597335 (25 bp)
GTTGCCTTCATGTGGTAACCGTTGT
LOC_Os01g56050
OsAffx.21602.1.S1_at--34--3511Chr01:32597162..32597185 (24 bp)
CATGTGGTAACCGTTGTGTACTAAC
LOC_Os01g56050
OsAffx.21602.1.S1_at--288--6771Chr01:32597157..32597181 (25 bp)
GGTAACCGTTGTGTACTAACCAATG
LOC_Os01g56050
OsAffx.21602.1.S1_at--138--4231Chr01:32597152..32597176 (25 bp)
CCGTTGTGTACTAACCAATGCAGGG
LOC_Os01g56050
OsAffx.21602.1.S1_at--864--10511Chr01:32596716..32596740 (25 bp)
TTCAGCTACTCAGATCTGTTCGACT
NONE
OsAffx.21602.1.S1_at--672--2011Chr01:32596709..32596733 (25 bp)
ACTCAGATCTGTTCGACTCCGTCGA
NONE
OsAffx.21602.1.S1_at--261--9371Chr01:32596688..32596712 (25 bp)
TCGACCACATGGCTGCGCGACATGT
NONE
Target Sequence 
TATGCTGTGGTTCGTAGCATTCTTGGAGATGTGGTATTACACAGCAGTGCTGATTCTGGTGGGTTGCCTGAAGAACCCAG
AGATTCAAGTTGGTGCGATTTCAATATGCATGAACTATCAGCTCTGGACACTGATGGTTGCAGTTGGCTTTAACGCTGCA
GTGAGTGTTCGCGTGGCAAACGAACTCGGCGCGAACCACCCGAAAGCAGCCAAATTCTCGGTCATCGTCGCCGTGGTCAC
GTCGGCCGCCGTCGGGCTAGTTTTCACTCTGGTCGCTCTCGGGTGGCGATTGGGGCAGGGTGGCAGTCATCGGTTGCCTT
CATGTGGTAACCGTTGTGTACTAACCAATGCAGGGGATTTGGGTGGGGATGCTGATCGGAACAATCCTGCAGACTGTTAT
TCTGCTTGTCATCCTCTACAGAACCAAATGGCAGAAAGAGCAGAGCAGAATAAAGATAAAGTTGGTCAATGTTCAGCTAC
TCAGATCTGTTCGACTCCGTCGACCACATGGCTGCGCGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis