Browse Element(s) Details


OsAffx.21602.2.S1_at

Description tigr:9629.m05479
TID=OsAffx.21602.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5605011/11MATE efflux family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21602.2.S1_at--989--3771Chr01:32597589..32597613 (25 bp)
CTCTGGTCGCTCTCGTGGCGAGGAA
LOC_Os01g56050
OsAffx.21602.2.S1_at--560--6191Chr01:32597570..32597594 (25 bp)
GAGGAAGCAGCTGCCGAGGCTTTTC
LOC_Os01g56050
OsAffx.21602.2.S1_at--456--4211Chr01:32597557..32597581 (25 bp)
CCGAGGCTTTTCACGGACGACGACG
LOC_Os01g56050
OsAffx.21602.2.S1_at--987--9031Chr01:32597532..32597556 (25 bp)
TGCTCGTCAGGGAGACTGCAAAACT
LOC_Os01g56050
OsAffx.21602.2.S1_at--114--2391Chr01:32597512..32597536 (25 bp)
AAACTGGGCTATCTTCTTGCAGCCA
LOC_Os01g56050
OsAffx.21602.2.S1_at--57--10751Chr01:32597496..32597520 (25 bp)
TTGCAGCCACCATATTCCTCAACAG
LOC_Os01g56050
OsAffx.21602.2.S1_at--1003--9591Chr01:32597317..32597341 (25 bp)
TCATCGGTTGCCTTCGTAAACATTG
LOC_Os01g56050
OsAffx.21602.2.S1_at--1143--11Chr01:32597296..32597320 (25 bp)
ATTGGCTGCTACTATCTCGTTGGTC
LOC_Os01g56050
OsAffx.21602.2.S1_at--17--10171Chr01:32597284..32597308 (25 bp)
TATCTCGTTGGTCTGCCTATTGCAG
LOC_Os01g56050
OsAffx.21602.2.S1_at--169--1671Chr01:32597261..32597285 (25 bp)
AGCCGTTTTTGGCTTCAGGCTGAGC
LOC_Os01g56050
OsAffx.21602.2.S1_at--650--8331Chr01:32597248..32597268 (21 bp)
GGCTGAGCCTTAATGCAACAGGGAT
LOC_Os01g56050
Target Sequence 
CTCTGGTCGCTCTCGTGGCGAGGAAGCAGCTGCCGAGGCTTTTCACGGACGACGACGTGCTCGTCAGGGAGACTGCAAAA
CTGGGCTATCTTCTTGCAGCCACCATATTCCTCAACAGCATCCAGCCGGTGCTATCAGGGGTGGCGATTGGGGCAGGGTG
GCAGTCATCGGTTGCCTTCGTAAACATTGGCTGCTACTATCTCGTTGGTCTGCCTATTGCAGCCGTTTTTGGCTTCAGGC
TGAGCCTTAATGCAACAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21602.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis