Browse Element(s) Details


OsAffx.21603.1.S1_at

Description tigr:9629.m05478
TID=OsAffx.21603.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AN1-like Zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5604011/11AN1-like Zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56000Os.38330.1.A1_at11/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_x_at10/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.54608.1.S1_x_at9/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56000Os.50634.1.S1_at3/111+32568083..32576975RNA recognition motif family protein, expressed
LOC_Os01g56010Os.38330.2.S1_at11/111+32576823..32578449Serpin family protein, expressed
LOC_Os01g56020Os.51650.1.S1_at11/111+32578996..32581870expressed protein
LOC_Os01g56030Os.55886.1.S1_at10/111+32585763..32586874EF hand family protein, expressed
LOC_Os01g56040OsAffx.21603.1.S1_at11/111+32593903..32596306AN1-like Zinc finger family protein
LOC_Os01g56050OsAffx.21602.2.S1_at11/111+32596902..32598995MATE efflux family protein
LOC_Os01g56050OsAffx.21602.1.S1_at8/111+32596902..32598995MATE efflux family protein
LOC_Os01g56060OsAffx.11618.1.S1_at11/111+32599866..32600330hypothetical protein
LOC_Os01g56070Os.38258.1.S1_x_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56070Os.38258.2.S1_at11/111+32603431..32605073Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g56080OsAffx.11619.1.S1_at11/111+32615995..32616652expressed protein
LOC_Os01g56090Os.33926.1.S1_at11/111+32620672..32622090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21603.1.S1_at--538--6391Chr01:32595716..32595740 (25 bp)
GATCGATCGTTTTGTTGCTCGGCGC
LOC_Os01g56040
OsAffx.21603.1.S1_at--96--7151Chr01:32595755..32595779 (25 bp)
GTCTTCCTCCCGAGAGCAAGAGAGA
LOC_Os01g56040
OsAffx.21603.1.S1_at--264--1351Chr01:32595773..32595797 (25 bp)
AGAGAGACGATCGTTCTACGCGCCA
LOC_Os01g56040
OsAffx.21603.1.S1_at--380--6731Chr01:32595785..32595809 (25 bp)
GTTCTACGCGCCAATATCATCAAGA
LOC_Os01g56040
OsAffx.21603.1.S1_at--299--2631Chr01:32595840..32595864 (25 bp)
AACCGGTCCTCTGTGCCAGTGGCTG
LOC_Os01g56040
OsAffx.21603.1.S1_at--370--4611Chr01:32595995..32596019 (25 bp)
GCGACCGGCGCAGTTACGTCTGATT
LOC_Os01g56040
OsAffx.21603.1.S1_at--1027--1211Chr01:32596006..32596030 (25 bp)
AGTTACGTCTGATTCCTGCTCCGTG
LOC_Os01g56040
OsAffx.21603.1.S1_at--238--4231Chr01:32596026..32596050 (25 bp)
CCGTGCCTTCCGCTGAGGTTAATGG
LOC_Os01g56040
OsAffx.21603.1.S1_at--591--2751Chr01:32596067..32596091 (25 bp)
AAGAACAACCCTGAGCCGGCGACGG
LOC_Os01g56040
OsAffx.21603.1.S1_at--566--7631Chr01:32596187..32596211 (25 bp)
GGGACGCACCGATACCCGGAGAAGC
LOC_Os01g56040
OsAffx.21603.1.S1_at--1073--6471Chr01:32596197..32596221 (25 bp)
GATACCCGGAGAAGCACGCCTGCGG
LOC_Os01g56040
Target Sequence 
GATCGATCGTTTTGTTGCTCGGCGCCCCCGGAGACGTACGTCTTCCTCCCGAGAGCAAGAGAGACGATCGTTCTACGCGC
CAATATCATCAAGATGTCGTCGGAGCAGCAGGCGAGCGCCGGCCAACCGGTCCTCTGTGCCAGTGGCTGCGGCTTCTACG
GGAACCCCGCCACCCTCGACATGTGCTCCGTCTGCTACCGCCAGCACTGCCTCCTCAACGGCGCCACGATGGCGACGGGG
CCCTCCTCTTCCGTGGCCGCCGCGAGCGCCGCTACCGTCGCGACCGGCGCAGTTACGTCTGATTCCTGCTCCGTGCCTTC
CGCTGAGGTTAATGGCGCCGCATTCTCCTCCAAGAACAACCCTGAGCCGGCGACGGTAGTAGAGAAGAAGGCGCCGGCGA
ACCGGTGCGCGTCGTGCAAGAAGAAGGTGGGACTGTTGGGGTTCGCATGCCGATGCGGGGCTACCTACTGCGGGACGCAC
CGATACCCGGAGAAGCACGCCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis