Browse Element(s) Details


OsAffx.21684.1.S1_at

Description gb:NM_190917.1
DB_XREF= gi:34908917
GEN=P0691E06.9
TID=OsAffx.21684.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0691E06.9 (P0691E06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5854011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58480OsAffx.23840.1.S1_at11/111+34136537..34137863hypothetical protein
LOC_Os01g58490OsAffx.23841.1.S1_at11/111+34138781..34139359hypothetical protein
LOC_Os01g58500Os.36178.1.S1_at10/111+34139763..34141975expressed protein
LOC_Os01g58510OsAffx.23842.1.S1_at11/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58510OsAffx.23842.3.S1_x_at1/111+34142253..34143446NB-ARC domain containing protein, expressed
LOC_Os01g58520Os.25235.1.A1_at11/111+34143539..34145585Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.2.S1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58530Os.26785.1.A1_at11/111+34152430..34155661Leucine Rich Repeat family protein, expressed
LOC_Os01g58540OsAffx.21684.1.S1_at11/111+34159008..34159987hypothetical protein
LOC_Os01g58550Os.42285.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58550Os.57355.1.S1_x_at11/111+34164236..34167815methyladenine glycosylase family protein, putative, expressed
LOC_Os01g58560Os.20602.2.S1_x_at11/111+34173699..34175879hAT family dimerisation domain containing protein
LOC_Os01g58570OsAffx.447.1.S1_at4/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.52609.1.S1_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.2.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570Os.46715.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g58570OsAffx.22947.1.S1_x_at1/111+34180307..34184857retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21684.1.S1_at--792--3611Chr01:34159226..34159250 (25 bp)
CTTGGTTTTGTCATCGTCAAGCAGC
LOC_Os01g58540
OsAffx.21684.1.S1_at--938--2571Chr01:34159254..34159278 (25 bp)
AACGGCACCTCGCTGGCTAGGTCAT
LOC_Os01g58540
OsAffx.21684.1.S1_at--1154--7814Chr11:21213574..21213598 (25 bp)
GGTCATCGTCGACGGAATCTGCTCC
NONE
OsAffx.21684.1.S1_at--6--5871Chr01:34159441..34159465 (25 bp)
GAGCCACAATGTCCTCTGCAATGAG
LOC_Os01g58540
OsAffx.21684.1.S1_at--1112--2971Chr01:34159448..34159472 (25 bp)
AATGTCCTCTGCAATGAGCCGGCGC
LOC_Os01g58540
OsAffx.21684.1.S1_at--828--7291Chr01:34159488..34159512 (25 bp)
GTGCTCGTCGCTGCCGTTAGGACTT
LOC_Os01g58540
OsAffx.21684.1.S1_at--843--8671Chr01:34159499..34159523 (25 bp)
TGCCGTTAGGACTTGGCCGCTTCCT
LOC_Os01g58540
OsAffx.21684.1.S1_at--1064--9291Chr01:34159538..34159562 (25 bp)
TCCCGGATTTTGTGGCGCAACCAGA
LOC_Os01g58540
OsAffx.21684.1.S1_at--337--9171Chr01:34159569..34159593 (25 bp)
TGCCGCGCTTGCTTGGTGCACCCAG
LOC_Os01g58540
OsAffx.21684.1.S1_at--61--10711Chr01:34159612..34159636 (25 bp)
TTGCCTGTCGCGTTTACCTCGTGCA
LOC_Os01g58540
OsAffx.21684.1.S1_at--948--8411Chr01:34159730..34159754 (25 bp)
GGCCGCGCCTGATGTCACAAGAGAG
LOC_Os01g58540
Target Sequence 
CTTGGTTTTGTCATCGTCAAGCAGCAACAACGGCACCTCGCTGGCTAGGTCATCGTCGACGGAATCTGCTCCGGTCTTCG
CCGCGACCGCGGTCGACCTTGGGGCCTCCAGCCCCGACCTCCTCCTTCTCCGGTCATCGCCTTCTCCTGGATCATGCCGT
NNNNNNNCNNNCNNNCNCNANNGTTCGNNGGNNTNNCACCGCCGTCGACCGGCCCGAGCCACAATGTCCTCTGCAATGAG
CCGGCGCCAGCGCCTGTCCGGGGTGCTCGTCGCTGCCGTTAGGACTTGGCCGCTTCCTCCATCGGCTCCGCCTCCCGGAT
TTTGTGGCGCAACCAGAGCCGCCTGCCGCGCTTGCTTGGTGCACCCAGCCGCGCCCGCCGCCACGCTTGCCTGTCGCGTT
TACCTCGTGCACCCAGCCGCGCCCGCCTCCGCCTCCACCTCGCTTCTCTGCCAATGTCCCGTGCCGCTGTCCACTGCCCG
CCCTCGCGTGCCGACCGCCCACGCGGCCGCGCCTGATGTCACAAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis