Browse Element(s) Details


OsAffx.21788.1.S1_x_at

Description gb:NM_190326.1
DB_XREF= gi:34907735
GEN=B1065G12.20
TID=OsAffx.21788.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative peptide transport protein (B1065G12.20), mRNA.
PROD=putative peptide transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6763011/11POT family protein, expressed
LOC_Os01g676401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21788.1.S1_x_at--945--7331Chr01:39636635..39636659 (25 bp)
GTGACCGGCCACGATCGCGGGTTCA
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--739--4672Chr01:39642092..39642116 (25 bp)
GCGGGTTCACGCAGCTGGCGCGGAT
LOC_Os01g67640
OsAffx.21788.1.S1_x_at--1063--1751Chr01:39636792..39636816 (25 bp)
ACCTGCCGCTGTCGATATTCTGGCA
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--65--4531Chr01:39636796..39636820 (25 bp)
GCCGCTGTCGATATTCTGGCAGGTG
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--821--8711Chr01:39636801..39636825 (25 bp)
TGTCGATATTCTGGCAGGTGCCGCA
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--659--8371Chr01:39636841..39636865 (25 bp)
GGCGTCGGAGGTGTTCACGTTCATC
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--1135--1891Chr01:39636935..39636959 (25 bp)
ACGTCGTTCGCGCTCGGCAACTACG
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--706--5151Chr01:39636951..39636975 (25 bp)
GCAACTACGCGAGCTCGGCGATCGT
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--942--8311Chr01:39637011..39637035 (25 bp)
GGCTCGGGTGGATCCCGGACAACAT
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--432--2611Chr01:39637037..39637061 (25 bp)
AACCGCGGCCACCTGGATGACTTCT
LOC_Os01g67630
OsAffx.21788.1.S1_x_at--293--3371Chr01:39637046..39637070 (25 bp)
CACCTGGATGACTTCTTCTGGCTGC
LOC_Os01g67630
Target Sequence 
GTGACCGGCCACGATCGCGGGTTCACGCAGCTGGCGCGGATGGGCGTCGGCCTCGTCATCCTCACCGTCGCCATGCTCGT
CGCCGGCACGCTGGAGGTGGCGCGGCGGCGCGTGATCGCGCGGCACGGCCTGTACGGCGACGACGGCGACGGGGGGTACC
TGCCGCTGTCGATATTCTGGCAGGTGCCGCAGTACGTGGTGGTGGGGGCGTCGGAGGTGTTCACGTTCATCGGGCAGATG
GAGTTCTTCTACGACCAGGCGCCCGACGCCATGCGCAGCCTCTGCTCCGGCCTGTCCAGCACGTCGTTCGCGCTCGGCAA
CTACGCGAGCTCGGCGATCGTCGTCGTCGTGGCGCGCGCCACGGCGCGCGGCGGGCGGCTCGGGTGGATCCCGGACAACA
TCAACCGCGGCCACCTGGATGACTTCTTCTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21788.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis