Browse Element(s) Details


OsAffx.21991.1.S1_at

Description gb:NM_189038.1
DB_XREF= gi:34905159
TID=OsAffx.21991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700D12.25 (P0700D12.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4064011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21991.1.S1_at--820--10031Chr08:25597170..25597194 (25 bp)
TAGAGCTTATCTCGCCGTCTCATCT
LOC_Os08g40640
OsAffx.21991.1.S1_at--922--9671Chr08:25597085..25597153 (25 bp)
TCACTCCGGCGATTTGGTTTTTCCG
LOC_Os08g40640
OsAffx.21991.1.S1_at--571--4631Chr08:25597077..25597097 (21 bp)
GCGATTTGGTTTTTCCGACTGGACT
LOC_Os08g40640
OsAffx.21991.1.S1_at--792--6391Chr08:25597075..25597097 (23 bp)
GATTTGGTTTTTCCGACTGGACTGA
LOC_Os08g40640
OsAffx.21991.1.S1_at--910--7851Chr08:25597070..25597094 (25 bp)
GGTTTTTCCGACTGGACTGAGTTCT
LOC_Os08g40640
OsAffx.21991.1.S1_at--676--10351Chr08:25597068..25597092 (25 bp)
TTTTTCCGACTGGACTGAGTTCTCG
LOC_Os08g40640
OsAffx.21991.1.S1_at--41--10671Chr08:25597065..25597089 (25 bp)
TTCCGACTGGACTGAGTTCTCGCCG
LOC_Os08g40640
OsAffx.21991.1.S1_at--964--4271Chr08:25596993..25597017 (25 bp)
CCTCCATTGTGCTGTGTCCAAGAAC
LOC_Os08g40640
OsAffx.21991.1.S1_at--171--4331Chr08:25596990..25597014 (25 bp)
CCATTGTGCTGTGTCCAAGAACGCG
LOC_Os08g40640
OsAffx.21991.1.S1_at--790--2731Chr08:25596974..25596998 (25 bp)
AAGAACGCGTCGAGGCACCGCTGCC
LOC_Os08g40640
OsAffx.21991.1.S1_at--151--6631Chr08:25596943..25596967 (25 bp)
GTTGTGCCACCGGACACCGACGTCG
LOC_Os08g40640
Target Sequence 
TAGAGCTTATCTCGCCGTCTCATCTCGCCACCAGCATCTCCTCACTCCGGCGATTTGGTTTTTCCGACTGGACTGAGTTC
TCGCCGCCGGCGTTCCCAACTCTTCCCTCGCTCCCCACGCCGGCTGCCGCCTTCCTCCATTGTGCTGTGTCCAAGAACGC
GTCGAGGCACCGCTGCCGCCGCCGTTGTGCCACCGGACACCGACGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis