Browse Element(s) Details


OsAffx.22085.1.S1_at

Description tigr:9629.m01247
TID=OsAffx.22085.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1279011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed
LOC_Os01g12830Os.49556.1.S1_at11/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12830OsAffx.23220.1.S1_x_at10/111+7096866..7100068D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g12840Os.23620.1.A1_a_at11/111+7101075..7105897expressed protein
LOC_Os01g12840Os.23620.1.A2_at7/111+7101075..7105897expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22085.1.S1_at--939--7911Chr01:7081535..7081559 (25 bp)
GGTTGTCCTACACTGTGACCTGAAG
LOC_Os01g12790
OsAffx.22085.1.S1_at--966--2991Chr01:7081586..7081610 (25 bp)
AATGACGGCGCATGTGGCGGACTTC
LOC_Os01g12790
OsAffx.22085.1.S1_at--152--8111Chr01:7081604..7081628 (25 bp)
GGACTTCGGCATCGCAAAGTTGCTA
LOC_Os01g12790
OsAffx.22085.1.S1_at--421--6451Chr01:7082061..7082085 (25 bp)
GATCACTCGGAAAGGCGTCGCGCAA
LOC_Os01g12790
OsAffx.22085.1.S1_at--842--9432Chr01:7082103..7082127 (25 bp)
TCGGAATCATGCTCCTTGAAGTCTT
LOC_Os01g12790
OsAffx.22085.1.S1_at--519--5551Chr01:7082133..7082157 (25 bp)
GAAAGCGACCCACGGATCGTTTGTT
LOC_Os01g12790
OsAffx.22085.1.S1_at--297--191Chr01:7082197..7082221 (25 bp)
ATTTCCGGCGAAGCTTGTTCATGTT
LOC_Os01g12790
OsAffx.22085.1.S1_at--394--3852Chr01:7082264..7082288 (25 bp)
CTGAATCACCTTCTTTTGCCAATAT
LOC_Os01g12790
OsAffx.22085.1.S1_at--344--1011Chr01:7082292..7082316 (25 bp)
AGGTTGGCTTGCTCTGCTCAAGTGA
LOC_Os01g12790
OsAffx.22085.1.S1_at--437--7371Chr01:7082313..7082337 (25 bp)
GTGACTTGCCTGACCAGAGGATGTC
LOC_Os01g12790
OsAffx.22085.1.S1_at--299--3211Chr01:7082337..7082361 (25 bp)
CAATGGCCGGTGTTGTGGTGACACT
LOC_Os01g12790
Target Sequence 
GGTTGTCCTACACTGTGACCTGAAGCCTAGCAATGTGTTATTTGATGAGGAAATGACGGCGCATGTGGCGGACTTCGGCA
TCGCAAAGTTGCTACTGGGTGATGACACGTCAAAGATCACGGCAAGCATGCCTGGAACATTTGGGTACATGGCACCAGAG
TACGGATCACTCGGAAAGGCGTCGCGCAATAGCGACGTGTTCAGCTTCGGAATCATGCTCCTTGAAGTCTTTACTGGAAA
GCGACCCACGGATCGTTTGTTCGTTGGAGAAGTGACCATTAGGCAGTGGGTCAATCAAGCATTTCCGGCGAAGCTTGTTC
ATGTTCTGGACGACAAGCTACAGCTAGATGAGTCTTCTATCCAAGACCTGAATCACCTTCTTTTGCCAATATTTGAGGTT
GGCTTGCTCTGCTCAAGTGACTTGCCTGACCAGAGGATGTCAATGGCCGGTGTTGTGGTGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis