Browse Element(s) Details


OsAffx.22232.1.S1_at

Description gb:NM_187852.1
DB_XREF= gi:34902787
TID=OsAffx.22232.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g148007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14760OsAffx.23249.1.S1_at11/111+8244542..8245306hypothetical protein
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22232.1.S1_at--931--1951Chr01:8270421..8270445 (25 bp)
ACTGGTGCTGCTACGAGGAGCTGCC
LOC_Os01g14800
OsAffx.22232.1.S1_at--994--3711Chr01:8270431..8270455 (25 bp)
CTACGAGGAGCTGCCGGTCTCGACG
LOC_Os01g14800
OsAffx.22232.1.S1_at--510--5811Chr01:8270567..8270591 (25 bp)
GACGCCGACGATCAGCAGCTGGTCT
LOC_Os01g14800
OsAffx.22232.1.S1_at--811--7891Chr01:8270619..8270643 (25 bp)
GGTTCGTCGCCAAGCCGTGGATCGC
LOC_Os01g14800
OsAffx.22232.1.S1_at--369--4251Chr01:8270633..8270657 (25 bp)
CCGTGGATCGCGTCGGTCTACGAGA
LOC_Os01g14800
OsAffx.22232.1.S1_at--395--7191Chr01:8270644..8270668 (25 bp)
GTCGGTCTACGAGAGGCTGTCACGA
LOC_Os01g14800
OsAffx.22232.1.S1_at--651--1311Chr01:8270655..8270679 (25 bp)
AGAGGCTGTCACGAACGTTTTCCGT
LOC_Os01g14800
OsAffx.22232.1.S1_at--971--1631Chr01:8271399..8271423 (25 bp)
AGCGATCATGTTCTGCGACGCCGTA
NONE
OsAffx.22232.1.S1_at--433--9471Chr01:8271426..8271450 (25 bp)
TCTGTCCATCTGTCGTCTTGAAAAC
NONE
OsAffx.22232.1.S1_at--952--1471Chr01:8271453..8271477 (25 bp)
AGAATCTATGCTGCGTGCTTTGCTC
NONE
OsAffx.22232.1.S1_at--295--9091Chr01:8271473..8271497 (25 bp)
TGCTCCGAGCCTCCGATGGAACATA
NONE
Target Sequence 
ACTGGTGCTGCTACGAGGAGCTGCCGGTCTCGACGCCGCCGCATGTGCCGCGGGGGCTGGCCAGAGGGGACGAGGACGAC
GACCACGACCACGACGACGACGATGGGCTGGAGCTGACGACGAGGGGGGCGCCGGGGGTTAGGGACGACGCCGACGATCA
GCAGCTGGTCTCGCCGGCGGCGGCGGCGGGTGGCGTCGGGTTCGTCGCCAAGCCGTGGATCGCGTCGGTCTACGAGAGGC
TGTCACGAACGTTTTCCGTGCTCCCCGTGACGAGCTCACCACCGTNNANNGGNNNANNNNGNNNNACNNNCNNNNNNNNN
NNAGCGATCATGTTCTGCGACGCCGTATCTCTGTCCATCTGTCGTCTTGAAAACAAAGAATCTATGCTGCGTGCTTTGCT
CCGAGCCTCCGATGGAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis