Browse Element(s) Details


OsAffx.22272.1.S1_at

Description gb:NM_187654.1
DB_XREF= gi:34902393
TID=OsAffx.22272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1384D03.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0178011/11transposon protein, putative, unclassified
LOC_Os11g454303/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22272.1.S1_at--177--9291Chr03:463805..464109 (25 bp)
TCCGTTTCACAATTTGCATTCCCTG
LOC_Os03g01780
OsAffx.22272.1.S1_at--10--52Chr03:464102..464126 (25 bp)
ATTCCCTGTGGACATGTTTACGGCA
LOC_Os03g01780
OsAffx.22272.1.S1_at--786--10492Chr03:464160..464184 (25 bp)
TTCAACGCGGCACTGGACAAGCAAA
LOC_Os03g01780
OsAffx.22272.1.S1_at--526--6691Chr03:464222..464246 (25 bp)
GTTGCCAGCAACTAATCAGCTAGTG
LOC_Os03g01780
OsAffx.22272.1.S1_at--44--3532Chr03:464258..464282 (25 bp)
CATGCAGTGTCCTCAATGCGGTGAA
LOC_Os03g01780
OsAffx.22272.1.S1_at--781--1732Chr03:464308..464332 (25 bp)
ACCTCTACGCGCCAGGAATCAATAT
LOC_Os03g01780
OsAffx.22272.1.S1_at--565--2852Chr03:464619..464643 (25 bp)
AAGTCTCAAGACATTCCTGCTATCA
LOC_Os03g01780
OsAffx.22272.1.S1_at--357--1311Chr03:464660..464684 (25 bp)
AGATGATGGCTACACAGCTGCCTGC
LOC_Os03g01780
OsAffx.22272.1.S1_at--971--5072Chr03:464683..464707 (25 bp)
GCAGCCATGGATCTCGTTCAATATT
LOC_Os03g01780
OsAffx.22272.1.S1_at--340--8711Chr03:464718..464742 (25 bp)
TGTCCATGATATCATATCCGCGCTC
LOC_Os03g01780
OsAffx.22272.1.S1_at--948--231Chr03:464757..464781 (25 bp)
ATATCTAGCTCGTCTCATGCATCCA
LOC_Os03g01780
Target Sequence 
TCCGTTTCACAATTTGCATTCCCTGTGGACATGTTTACGGCAGATCGTGCCTGGAGAAGTGGCTGGTACATGTTCTTCAA
CGCGGCACTGGACAAGCAAAGTTGTGCGTTGCCAGCAACTAATCAGCTAGTGACTATACTGAGCATGCAGTGTCCTCAAT
GCGGTGAAGAGTTGGAGCCGCACCGCATTACCAACCTCTACGCGCCAGGAATCAATATATGGGACGGTTGCTGCAAAAAC
CATGCGAATGAGGTAGGAGAGTATTACAACCGTGAGTACGAGGGGCTGAAAACACAAATGGAGTCGACGATCGCTAAACA
AGGCAAGGATTTGGAAGAATTGGATGTGCTCGTGAAATCGGTGGGCAGGCAGTTTGAGAGCCTTGAATCAAGTCTCAAGA
CATTCCTGCTATCAATGACGGAGCGGATGAAGATGATGGCTACACAGCTGCCTGCAGCCATGGATCTCGTTCAATATTTG
GAGAAGGATGTCCATGATATCATATCCGCGCTCTCCCAAAAACCTCCATATCTAGCTCGTCTCATGCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis