Browse Element(s) Details


OsAffx.22274.1.S1_at

Description tigr:9631.m00056
TID=OsAffx.22274.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g015209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed
LOC_Os03g01540Os.35561.4.S1_x_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01540Os.35561.3.S1_at11/113+322654..325337DNA-binding family protein, putative, expressed
LOC_Os03g01550Os.35561.1.S1_x_at11/113+326776..330635expressed protein
LOC_Os03g01560OsAffx.24936.1.S1_at11/113+334208..334558hypothetical protein
LOC_Os03g01570Os.20075.1.S1_at9/113+335073..338062Uncharacterised protein family containing protein, expressed
LOC_Os03g01580Os.14614.1.A1_at11/113+340048..345359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22274.1.S1_at--294--8211Chr03:316977..317001 (25 bp)
GGAATGTTGTCCTTAGTGAAAGAAG
LOC_Os03g01520
OsAffx.22274.1.S1_at--29--5953Chr07:16187969..16188342 (25 bp)
GAGCAATGGAACAAGTATCAAGTCA
NONE
OsAffx.22274.1.S1_at--432--2631Chr03:316733..316755 (23 bp)
AACCTGCAGTCCCTGATGTTGGTCT
LOC_Os03g01520
OsAffx.22274.1.S1_at--824--3451NONE
CAGTCCCTGATGTTGGTCTGGTGTC
NONE
OsAffx.22274.1.S1_at--1144--9451Chr03:316077..316101 (25 bp)
TCTGGTGTCTGGGTTAAGACCTGGT
LOC_Os03g01520
OsAffx.22274.1.S1_at--259--8951Chr03:316063..316087 (25 bp)
TAAGACCTGGTACCTGGGTTTTCTG
LOC_Os03g01520
OsAffx.22274.1.S1_at--869--6791Chr03:316046..316070 (25 bp)
GTTTTCTGGGAGGTACCAGACCTAG
LOC_Os03g01520
OsAffx.22274.1.S1_at--1151--9971Chr03:316033..316057 (25 bp)
TACCAGACCTAGTACCTATATTTGT
LOC_Os03g01520
OsAffx.22274.1.S1_at--487--1751Chr03:316020..316044 (25 bp)
ACCTATATTTGTGAGGCGGATACCT
LOC_Os03g01520
OsAffx.22274.1.S1_at--845--8351Chr03:316008..316030 (23 bp)
GGCGGATACCTCTATACTGTGAGAA
LOC_Os03g01520
OsAffx.22274.1.S1_at--479--311NONE
ATACCTCTATACTGTGAGAATCGGA
NONE
Target Sequence 
GGAATGTTGTCCTTAGTGAAAGAAGTATGAAAGAGCAACATAGTGACAAGGATGATGTTTGTGTTGAAAGAGCAATGGAA
CAAGTATCAAGTCATGATGATGATGTGTTGAGGGAAGCACTGCTTGAAACTGGGTTGTTTACAGGTGCCATGAGCATTGA
TCAAATTGATGCAGGTGATGAGTTTGAAATACAAGATGAGTTTGGACATGAAGATGGAGAAACTGAAGATGAGGGGGTCC
AATCTCAACCTGCAGTCCCTGATGTTGGTCTGGTGTCTGGGTTAAGACCTGGTACCTGGGTTTTCTGGGAGGTACCAGAC
CTAGTACCTATATTTGTGAGGCGGATACCTCTATACTGTGAGAATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis